JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP14_chr11_7015479_7076526	0/0	c0027	3282	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0028	3282	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0029	3282	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0030	3282	1	0	1	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0031	3282	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0032	3282	1	0	1	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0033	3282	1	1	0	0	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0034	3282	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0035	3282	1	0	0	0	0	1	copy fasta	NLRP14	chr11	7015479	7076526
NLRP14_chr11_7015479_7076526	0/0	c0036	3282	1	0	0	1	0	0	copy fasta	NLRP14	chr11	7015479	7076526
NLRP1_chr17_5509118_5589509	1/1	c0001	4422	134	33	33	49	8	9	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0002	4422	91	1	14	64	0	12	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0003	4422	20	0	0	19	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0004	4422	19	0	0	15	0	4	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0005	4422	17	15	2	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0006	4422	13	0	4	6	0	3	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0007	4422	13	10	3	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0008	4422	12	1	10	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0009	4422	12	0	0	12	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0010	4422	6	5	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0011	4422	5	0	1	0	2	2	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0012	4422	4	1	0	1	2	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0013	4422	4	0	0	4	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0014	4422	4	4	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0015	4422	4	4	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0016	4422	2	0	0	2	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0017	4422	2	0	0	0	1	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0018	4422	2	0	0	1	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0019	4422	2	0	0	0	0	2	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0020	4422	2	0	1	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0021	4422	2	2	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0022	4422	2	2	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0023	4422	2	2	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0024	4422	2	2	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0025	4422	1	0	0	1	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0026	4422	1	0	0	0	1	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0027	4422	1	0	0	1	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0028	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0029	4422	1	0	0	1	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0030	4422	1	0	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0031	4422	1	0	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0032	4422	1	0	0	1	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0033	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0034	4422	1	0	0	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0035	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0036	4422	1	0	0	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0037	4422	1	0	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0038	4422	1	0	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0039	4422	1	0	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0040	4422	1	0	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509