JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP1_chr17_5509118_5589509	0/0	c0041	4422	1	0	0	1	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0042	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0043	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0044	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0045	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0046	4422	1	0	1	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0047	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0048	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0049	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0050	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0051	4422	1	1	0	0	0	0	copy fasta	NLRP1	chr17	5509118	5589509
NLRP1_chr17_5509118_5589509	0/0	c0052	4422	1	0	0	0	0	1	copy fasta	NLRP1	chr17	5509118	5589509
NLRP2B_chrX_57672067_57685260	1/1	c0001	138	340	78	64	149	13	34	copy fasta	NLRP2B	chrX	57672067	57685260
NLRP2_chr19_54961374_55006138	0/0	c0001	3189	69	2	15	43	4	5	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0002	3189	56	21	10	13	3	9	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0003	3189	50	3	18	23	1	5	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0004	3189	26	9	2	9	0	6	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/1	c0005	3189	25	3	2	14	0	5	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0006	3189	22	0	7	13	1	1	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0007	3189	21	2	3	11	3	2	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0008	3189	17	4	0	13	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0009	3189	13	3	3	3	1	3	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0010	3189	12	3	1	6	0	2	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0011	3189	11	0	7	0	2	2	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0012	3189	10	4	0	3	0	3	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0013	3189	7	4	2	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0014	3189	6	2	3	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0015	3189	5	5	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0016	3189	4	0	1	3	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0017	3189	3	1	2	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0018	3189	3	0	0	3	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0019	3189	3	2	0	0	0	1	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0020	3189	3	1	2	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0021	3189	3	3	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0022	3189	3	0	0	3	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0023	3189	3	3	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0024	3189	3	0	0	3	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0025	3189	2	1	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0026	3189	2	1	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0027	3189	2	0	0	2	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0028	3189	2	1	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0029	3189	2	1	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0030	3189	2	0	0	2	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0031	3189	2	2	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0032	3189	2	2	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0033	3189	1	0	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0034	3189	1	0	0	0	1	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0035	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0036	3189	1	0	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0037	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138