JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP2_chr19_54961374_55006138	0/0	c0038	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0039	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0040	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0041	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0042	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0043	3189	1	0	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0044	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0045	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0046	3189	1	0	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0047	3189	1	0	0	0	0	1	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0048	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0049	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0050	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0051	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0052	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0053	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0054	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0055	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0056	3189	1	0	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0057	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0058	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0059	3189	1	0	1	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0060	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0061	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0062	3189	1	1	0	0	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0063	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0064	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0065	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0066	3189	1	0	0	1	0	0	copy fasta	NLRP2	chr19	54961374	55006138
NLRP2_chr19_54961374_55006138	0/0	c0067	3189	1	0	0	0	0	1	copy fasta	NLRP2	chr19	54961374	55006138
NLRP3_chr1_247411173_247453817	0/0	c0001	3105	148	46	33	54	5	10	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/1	c0002	3105	130	4	23	86	7	9	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0003	3105	58	20	9	25	2	2	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0004	3105	34	2	4	23	2	3	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	1/0	c0005	3105	32	14	8	0	0	9	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0006	3105	5	0	0	5	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0007	3105	5	0	2	1	0	2	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0008	3105	4	4	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0009	3105	3	0	0	0	0	3	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0010	3105	2	0	0	2	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0011	3105	2	0	1	0	1	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0012	3105	2	2	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0013	3105	2	1	0	0	1	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0014	3105	2	0	0	0	0	2	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0015	3105	1	0	0	1	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0016	3105	1	0	0	1	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0017	3105	1	0	0	0	0	1	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0018	3105	1	0	0	1	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0019	3105	1	1	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0020	3105	1	1	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817