JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APOA5_chr11_116784367_116796879	0/0	c0008	1101	1	0	0	1	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	c0009	1101	1	1	0	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	c0010	1101	1	0	0	0	1	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	c0011	1101	1	0	1	0	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOA5_chr11_116784367_116796879	0/0	c0012	1101	1	0	0	1	0	0	copy fasta	APOA5	chr11	116784367	116796879
APOBEC1_chr12_7644400_7670908	1/0	c0001	711	171	56	23	82	2	7	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/1	c0002	711	148	23	36	71	6	11	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	c0003	711	108	18	19	41	4	26	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	c0004	711	3	0	0	0	2	1	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	c0005	711	1	0	0	0	0	1	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC1_chr12_7644400_7670908	0/0	c0006	711	1	1	0	0	0	0	copy fasta	APOBEC1	chr12	7644400	7670908
APOBEC2_chr6_41048202_41069891	1/1	c0001	675	255	83	42	102	4	22	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0002	675	86	2	20	50	2	12	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0003	675	5	5	0	0	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0004	675	4	3	1	0	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0005	675	3	0	0	1	0	2	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0006	675	1	0	1	0	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0007	675	1	0	0	1	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0008	675	1	0	0	0	0	1	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0009	675	1	0	0	1	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0010	675	1	0	0	0	0	1	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0011	675	1	0	0	1	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC2_chr6_41048202_41069891	0/0	c0012	675	1	1	0	0	0	0	copy fasta	APOBEC2	chr6	41048202	41069891
APOBEC3A_chr22_38952609_38968184	1/0	c0001	600	107	26	39	15	5	21	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/1	c0002	600	91	17	17	42	7	7	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0003	600	85	19	14	38	3	11	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0004	585	37	1	8	24	1	3	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0005	600	19	17	2	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0006	600	11	10	1	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0007	174	3	2	0	1	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0008	600	2	2	0	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0009	600	1	0	1	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0010	585	1	0	0	1	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0011	600	1	0	0	1	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0012	600	1	1	0	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3A_chr22_38952609_38968184	0/0	c0013	600	1	1	0	0	0	0	copy fasta	APOBEC3A	chr22	38952609	38968184
APOBEC3B_chr22_38977347_38997779	0/1	c0001	1149	128	13	28	70	4	12	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0002	1149	85	12	30	25	11	7	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	1/0	c0003	1149	41	3	6	25	1	5	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0004	1149	15	6	4	0	0	5	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0005	1149	11	3	0	6	0	2	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0006	1149	10	10	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0007	1149	8	8	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0008	1149	7	7	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0009	1149	5	5	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0010	1149	4	2	0	2	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0011	1149	3	3	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0012	1148	3	3	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0013	1148	3	3	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0014	1149	3	0	0	3	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779