JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP3_chr1_247411173_247453817	0/0	c0021	3105	1	1	0	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0022	3105	1	0	0	1	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0023	3105	1	0	1	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0024	3105	1	0	1	0	0	0	copy fasta	NLRP3	chr1	247411173	247453817
NLRP3_chr1_247411173_247453817	0/0	c0025	3105	1	0	0	0	0	1	copy fasta	NLRP3	chr1	247411173	247453817
NLRP4_chr19_55831540_55886855	0/0	c0001	2985	80	20	6	42	3	9	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0002	2985	69	23	8	37	1	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	1/0	c0003	2985	38	9	6	11	3	8	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0004	2985	29	0	1	25	0	3	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0005	2985	26	17	0	9	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0006	2985	24	0	10	1	1	12	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0007	2985	21	2	8	11	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/1	c0008	2985	16	1	0	13	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0009	2985	16	10	5	1	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0010	2985	13	0	11	2	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0011	2985	12	0	0	9	0	3	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0012	2985	9	0	1	7	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0013	2985	8	0	6	1	1	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0014	2985	6	0	4	0	2	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0015	2985	4	1	1	0	2	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0016	2985	4	0	0	4	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0017	2985	4	3	1	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0018	2985	4	0	0	0	2	2	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0019	2985	3	0	2	0	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0020	2985	3	0	0	3	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0021	2985	3	0	3	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0022	2985	2	2	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0023	2985	2	2	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0024	2985	2	0	1	0	1	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0025	2985	2	0	0	2	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0026	2985	2	0	0	2	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0027	2985	2	0	0	2	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0028	2985	2	0	2	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0029	2985	2	0	0	1	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0030	2985	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0031	2985	1	0	0	0	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0032	2985	1	0	0	1	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0033	2985	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0034	2985	1	0	1	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0035	2985	1	0	1	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0036	2985	1	0	0	1	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0037	2985	1	0	0	0	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0038	2985	1	0	0	0	0	1	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0039	2985	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0040	2985	1	0	1	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0041	2985	1	0	0	1	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0042	2985	1	0	1	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0043	2985	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0044	2985	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855
NLRP4_chr19_55831540_55886855	0/0	c0045	2985	1	1	0	0	0	0	copy fasta	NLRP4	chr19	55831540	55886855