JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP5_chr19_55994726_56066810	0/0	c0001	3603	34	4	15	9	0	6	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0002	3603	29	2	13	8	0	6	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0003	3603	20	0	6	8	1	5	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0004	3603	18	0	4	12	2	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0005	3603	13	1	0	12	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0006	3603	12	0	0	11	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0007	3603	10	5	1	2	2	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0008	3603	10	8	0	0	0	2	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0009	3603	10	1	1	8	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0010	3603	8	2	2	3	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0011	3603	8	0	0	8	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0012	3603	8	0	1	5	0	2	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0013	3603	7	5	0	2	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0014	3603	6	0	5	0	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0015	3603	6	0	2	2	1	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0016	3603	6	0	0	5	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0017	3603	5	2	2	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0018	3603	5	0	0	2	1	2	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0019	3603	5	5	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0020	3603	5	2	0	3	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0021	3603	5	1	0	4	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0022	3603	5	1	2	2	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0023	3603	4	4	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0024	3603	4	0	2	1	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0025	3603	4	0	0	3	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0026	3603	4	0	0	4	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0027	3603	3	1	0	1	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0028	3603	3	0	0	3	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	1/0	c0029	3603	3	1	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0030	3603	3	0	0	3	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0031	3603	3	0	2	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0032	3603	3	1	2	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0033	3603	3	0	0	3	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0034	3603	3	0	0	3	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0035	3603	3	3	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0036	3603	2	0	0	0	0	2	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0037	3603	2	0	0	0	2	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0038	3603	2	0	0	1	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0039	3603	2	0	0	2	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0040	3603	2	2	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0041	3603	2	1	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0042	3603	2	2	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0043	3603	2	0	0	2	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0044	3603	2	0	0	2	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0045	3603	2	1	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0046	3603	2	0	2	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0047	3603	2	0	0	2	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0048	3603	2	0	0	0	0	2	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0049	3603	2	1	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0050	3603	2	1	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810