JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP5_chr19_55994726_56066810	0/0	c0051	3603	2	2	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0052	3603	2	0	1	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0053	3603	2	2	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0054	3603	2	0	0	2	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0055	3603	2	0	0	2	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0056	3603	2	0	1	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0057	3603	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0058	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0059	3603	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0060	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0061	3603	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0062	3603	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0063	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0064	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0065	3603	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0066	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0067	3603	1	0	0	0	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0068	3603	1	0	0	0	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0069	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0070	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0071	3603	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0072	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0073	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0074	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0075	3603	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0076	3603	1	0	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0077	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0078	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0079	3603	1	0	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0080	3603	1	0	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0081	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0082	3603	1	0	0	0	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0083	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0084	3603	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0085	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0086	3603	1	0	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0087	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0088	3603	1	0	0	0	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0089	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0090	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0091	3603	1	0	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0092	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0093	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0094	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0095	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0096	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0097	3546	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0098	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0099	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0100	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810