JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP5_chr19_55994726_56066810	0/0	c0101	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0102	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0103	3603	1	0	0	0	0	1	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0104	3603	1	0	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0105	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0106	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0107	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0108	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0109	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0110	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0111	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0112	3603	1	0	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0113	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0114	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0115	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0116	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0117	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0118	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0119	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0120	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/1	c0121	3603	1	0	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0122	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0123	3603	1	0	1	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0124	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0125	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0126	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0127	3603	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0128	3603	1	0	0	1	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0129	3546	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0130	3546	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0131	3546	1	1	0	0	0	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP5_chr19_55994726_56066810	0/0	c0132	3603	1	0	0	0	1	0	copy fasta	NLRP5	chr19	55994726	56066810
NLRP6_chr11_273407_290388	1/0	c0001	2676	88	0	6	72	1	8	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0002	2676	62	1	27	18	4	12	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0003	2676	44	0	1	41	1	1	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0004	2676	44	2	11	18	3	10	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0005	2676	30	0	0	28	0	2	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0006	2676	15	14	1	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0007	2676	15	1	10	0	3	1	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0008	2676	13	8	1	4	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0009	2676	13	0	0	9	0	4	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0010	2676	11	2	4	0	1	4	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0011	2676	11	10	1	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0012	2676	6	0	4	0	1	1	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0013	2676	5	4	1	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0014	2676	5	1	2	0	1	1	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0015	2676	4	0	0	4	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0016	2676	4	0	0	3	0	1	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/0	c0017	2676	4	4	0	0	0	0	copy fasta	NLRP6	chr11	273407	290388
NLRP6_chr11_273407_290388	0/1	c0018	2676	4	0	3	0	0	0	copy fasta	NLRP6	chr11	273407	290388