JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP6_chr11_273407_290388	0/0	c0069	2676	1	0	0	0	0	1	copy fasta	NLRP6	chr11	273407	290388
NLRP7_chr19_54918515_54952530	0/0	c0001	3114	148	14	24	78	7	25	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0002	3114	88	9	21	42	4	12	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0003	3114	46	4	7	28	1	6	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0004	3114	26	5	7	10	1	3	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0005	3114	11	1	5	3	2	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0006	3114	5	4	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0007	3114	5	4	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0008	3114	4	4	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0009	3114	4	4	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0010	3114	3	3	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0011	3114	3	1	1	0	0	1	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0012	3114	3	1	2	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0013	3114	3	0	0	3	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0014	3114	3	3	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0015	3114	3	0	2	0	1	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0016	3114	3	3	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0017	3114	2	2	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0018	3114	2	0	0	2	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0019	3114	2	0	0	2	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0020	3114	2	1	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0021	3114	2	2	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0022	3114	2	2	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0023	3114	2	1	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0024	3114	2	2	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0025	3114	2	1	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0026	3114	2	0	0	2	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0027	3114	2	2	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0028	3114	2	2	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0029	3114	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0030	3114	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0031	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0032	3114	1	0	0	0	0	1	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0033	3114	1	0	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0034	3114	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0035	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0036	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0037	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0038	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0039	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0040	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0041	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0042	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0043	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0044	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/1	c0045	3114	1	0	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0046	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0047	3114	1	0	0	0	1	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0048	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0049	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530