JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP7_chr19_54918515_54952530	0/0	c0050	3114	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0051	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0052	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0053	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0054	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0055	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0056	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0057	3114	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0058	3114	1	0	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0059	3114	1	0	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0060	3114	1	0	0	0	1	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0061	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0062	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0063	3114	1	0	1	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0064	3114	1	1	0	0	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP7_chr19_54918515_54952530	0/0	c0065	3114	1	0	0	1	0	0	copy fasta	NLRP7	chr19	54918515	54952530
NLRP8_chr19_55942832_55993629	0/0	c0001	3147	56	2	20	12	3	19	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0002	3147	44	1	7	29	2	5	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0003	3147	27	1	3	21	0	2	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/1	c0004	3147	26	12	3	6	3	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0005	3147	26	0	0	23	0	3	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0006	3147	12	11	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0007	3147	10	8	2	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0008	3147	9	6	2	0	1	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	1/0	c0009	3147	8	0	1	3	2	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0010	3147	8	1	4	1	1	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0011	3147	7	1	3	3	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0012	3147	6	0	0	6	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0013	3147	6	3	1	2	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0014	3147	5	0	1	0	1	3	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0015	3147	5	0	0	2	2	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0016	3147	5	5	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0017	3147	5	4	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0018	3147	5	0	5	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0019	3147	5	5	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0020	3147	4	1	2	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0021	3147	3	3	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0022	3147	3	3	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0023	3147	3	0	1	0	1	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0024	3147	3	3	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0025	3147	3	0	0	3	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0026	3147	3	3	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0027	3147	2	2	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0028	3147	2	0	2	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0029	3147	2	0	0	2	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0030	3147	2	0	0	0	0	2	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0031	3147	2	0	0	2	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0032	3147	2	1	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0033	3147	2	1	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0034	3147	2	2	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629