JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRP8_chr19_55942832_55993629	0/0	c0035	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0036	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0037	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0038	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0039	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0040	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0041	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0042	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0043	3147	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0044	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0045	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0046	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0047	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0048	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0049	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0050	3147	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0051	3147	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0052	3147	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0053	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0054	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0055	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0056	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0057	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0058	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0059	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0060	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0061	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0062	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0063	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0064	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0065	3147	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0066	3147	1	0	0	0	0	1	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0067	3147	1	0	1	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0068	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0069	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0070	3147	1	0	0	1	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP8_chr19_55942832_55993629	0/0	c0071	3147	1	1	0	0	0	0	copy fasta	NLRP8	chr19	55942832	55993629
NLRP9_chr19_55703438_55743402	0/1	c0001	2976	1	0	0	0	0	0	copy fasta	NLRP9	chr19	55703438	55743402
NLRP9_chr19_55703438_55743402	1/0	c0002	2976	1	0	0	0	0	0	copy fasta	NLRP9	chr19	55703438	55743402
NLRX1_chr11_119163725_119189016	0/0	c0001	2928	218	27	26	127	5	33	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	1/1	c0002	2928	92	12	32	29	10	7	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0003	2928	15	11	3	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0004	2928	12	12	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0005	2928	8	8	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0006	2928	6	6	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0007	2928	5	0	0	4	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0008	2928	3	3	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0009	2928	2	2	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0010	2928	2	2	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0011	2928	2	0	0	2	0	0	copy fasta	NLRX1	chr11	119163725	119189016