JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NLRX1_chr11_119163725_119189016	0/0	c0012	2928	2	0	0	2	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0013	2928	2	2	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0014	2928	2	1	1	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0015	2928	2	2	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0016	2928	2	0	0	2	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0017	2928	2	1	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0018	2928	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0019	2928	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0020	2928	1	0	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0021	2928	1	0	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0022	2928	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0023	2928	1	0	0	1	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0024	2928	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0025	2928	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0026	2928	1	0	0	1	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0027	2928	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0028	2928	1	0	0	1	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0029	2928	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0030	2928	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0031	2928	1	0	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0032	2928	1	1	0	0	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0033	2928	1	0	0	1	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0034	2928	1	0	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0035	2928	1	0	0	0	1	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0036	2928	1	0	0	0	0	1	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0037	2928	1	0	0	1	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NLRX1_chr11_119163725_119189016	0/0	c0038	2928	1	0	0	1	0	0	copy fasta	NLRX1	chr11	119163725	119189016
NMBR_chr6_142069484_142152122	1/1	c0001	1173	249	65	45	95	11	31	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	c0002	1173	63	15	18	25	1	4	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	c0003	1173	11	11	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	c0004	1173	2	2	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	c0005	1173	1	1	0	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	c0006	1173	1	0	1	0	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	c0007	1173	1	0	0	1	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	c0008	1173	1	0	0	0	0	1	copy fasta	NMBR	chr6	142069484	142152122
NMBR_chr6_142069484_142152122	0/0	c0009	1173	1	0	0	1	0	0	copy fasta	NMBR	chr6	142069484	142152122
NMB_chr15_84650132_84663199	1/0	c0001	366	337	82	52	154	15	33	copy fasta	NMB	chr15	84650132	84663199
NMB_chr15_84650132_84663199	0/0	c0002	366	53	1	21	25	1	5	copy fasta	NMB	chr15	84650132	84663199
NMB_chr15_84650132_84663199	0/1	c0003	366	17	15	1	0	0	0	copy fasta	NMB	chr15	84650132	84663199
NMB_chr15_84650132_84663199	0/0	c0004	366	1	0	0	1	0	0	copy fasta	NMB	chr15	84650132	84663199
NMD3_chr3_161216311_161257307	1/1	c0001	1512	356	82	59	168	12	33	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	c0002	1512	27	1	7	17	0	2	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	c0003	1512	4	0	0	0	0	4	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	c0004	1512	2	2	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	c0005	1512	2	0	2	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	c0006	1512	2	0	0	0	0	2	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	c0007	1512	2	2	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	c0008	1512	1	0	0	1	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	c0009	1512	1	1	0	0	0	0	copy fasta	NMD3	chr3	161216311	161257307
NMD3_chr3_161216311_161257307	0/0	c0010	1512	1	0	0	0	0	1	copy fasta	NMD3	chr3	161216311	161257307