JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NME1_chr17_51148559_51167168	1/1	c0001	459	378	95	77	153	13	38	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	c0002	459	1	0	1	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	c0003	459	1	1	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	c0004	459	1	0	0	0	1	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	c0005	459	1	1	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	c0006	497	1	0	0	1	0	0	copy fasta	NME1	chr17	51148559	51167168
NME1_chr17_51148559_51167168	0/0	c0007	333	1	1	0	0	0	0	copy fasta	NME1	chr17	51148559	51167168
NME2_chr17_51161411_51176744	1/0	c0001	459	413	98	82	170	18	44	copy fasta	NME2	chr17	51161411	51176744
NME3_chr16_1765320_1776543	0/0	c0001	510	301	80	62	107	16	36	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	1/1	c0002	510	113	9	10	78	2	12	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	c0003	510	4	4	0	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	c0004	510	1	1	0	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	c0005	510	1	0	0	1	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	c0006	510	1	0	0	1	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	c0007	531	1	1	0	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	c0008	510	1	0	0	0	0	1	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	c0009	510	1	0	0	0	0	1	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	c0010	510	1	1	0	0	0	0	copy fasta	NME3	chr16	1765320	1776543
NME3_chr16_1765320_1776543	0/0	c0011	510	1	0	0	1	0	0	copy fasta	NME3	chr16	1765320	1776543
NME4_chr16_392199_405754	1/1	c0001	564	185	34	38	88	8	15	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	c0002	564	119	26	25	39	6	23	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	c0003	564	24	11	2	9	0	2	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	c0004	564	20	12	0	4	0	4	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	c0005	564	2	2	0	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	c0006	564	2	2	0	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	c0007	564	1	0	0	1	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	c0008	564	1	0	1	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	c0009	564	1	1	0	0	0	0	copy fasta	NME4	chr16	392199	405754
NME4_chr16_392199_405754	0/0	c0010	564	1	0	0	1	0	0	copy fasta	NME4	chr16	392199	405754
NME5_chr5_138110175_138144428	1/1	c0001	639	387	88	81	166	16	34	copy fasta	NME5	chr5	138110175	138144428
NME5_chr5_138110175_138144428	0/0	c0002	639	1	0	1	0	0	0	copy fasta	NME5	chr5	138110175	138144428
NME6_chr3_48287317_48306367	0/0	c0001	561	319	84	66	126	12	31	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	c0002	561	3	0	0	3	0	0	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	c0003	561	1	0	0	0	0	1	copy fasta	NME6	chr3	48287317	48306367
NME6_chr3_48287317_48306367	0/0	c0004	561	1	0	0	1	0	0	copy fasta	NME6	chr3	48287317	48306367
NME7_chr1_169127531_169372797	1/1	c0001	1131	239	63	37	100	6	31	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	c0002	1131	58	17	23	8	6	4	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	c0003	1131	2	2	0	0	0	0	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	c0004	1131	1	0	0	1	0	0	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	c0005	1131	1	0	0	0	0	1	copy fasta	NME7	chr1	169127531	169372797
NME7_chr1_169127531_169372797	0/0	c0006	1131	1	0	0	1	0	0	copy fasta	NME7	chr1	169127531	169372797
NME8_chr7_37843597_37905397	0/0	c0001	1767	109	25	23	48	3	10	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0002	1767	37	5	2	26	0	4	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0003	1767	31	22	3	4	1	1	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0004	1767	30	4	4	13	4	5	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0005	1767	25	1	11	8	1	4	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0006	1767	18	0	4	12	2	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0007	1767	17	5	1	6	0	5	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0008	1767	17	0	1	14	0	2	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0009	1767	17	0	1	12	1	3	copy fasta	NME8	chr7	37843597	37905397