JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APOBEC3B_chr22_38977347_38997779	0/0	c0015	1149	3	3	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0016	1149	3	3	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0017	1149	2	2	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0018	1149	2	2	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0019	1149	2	2	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0020	1149	1	0	1	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0021	1149	1	0	1	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0022	1149	1	0	0	1	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0023	1149	1	0	1	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0024	1149	1	0	0	1	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0025	1149	1	0	0	1	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0026	1149	1	1	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0027	1149	1	1	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0028	1149	1	1	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0029	1149	1	0	1	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0030	1149	1	0	0	1	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0031	1149	1	0	0	1	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0032	1149	1	1	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0033	1149	1	1	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0034	1149	1	1	0	0	0	0	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3B_chr22_38977347_38997779	0/0	c0035	1149	1	0	0	0	0	1	copy fasta	APOBEC3B	chr22	38977347	38997779
APOBEC3C_chr22_39009257_39025352	1/1	c0001	573	444	88	82	210	13	49	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	c0002	573	9	9	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	c0003	573	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	c0004	573	1	1	0	0	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	c0005	573	1	0	0	0	1	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	c0006	573	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	c0007	573	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	c0008	573	1	0	0	1	0	0	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3C_chr22_39009257_39025352	0/0	c0009	573	1	0	0	0	0	1	copy fasta	APOBEC3C	chr22	39009257	39025352
APOBEC3D_chr22_39016127_39038277	1/1	c0001	1161	437	86	80	208	14	47	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0002	1161	5	5	0	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0003	1161	4	4	0	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0004	1158	3	0	3	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0005	1161	2	1	1	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0006	1161	1	1	0	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0007	1161	1	0	0	1	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0008	1161	1	0	0	0	0	1	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0009	1161	1	0	1	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0010	1161	1	1	0	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0011	1161	1	0	0	1	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3D_chr22_39016127_39038277	0/0	c0012	1161	1	0	1	0	0	0	copy fasta	APOBEC3D	chr22	39016127	39038277
APOBEC3F_chr22_39035864_39060972	0/0	c0001	1122	207	16	47	113	5	26	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	1/1	c0002	1122	143	32	21	62	9	17	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0003	1122	24	22	2	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0004	1122	13	3	0	9	0	1	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0005	1122	8	6	2	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0006	1122	4	2	2	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0007	1122	3	2	1	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0008	1122	3	0	3	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972