JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NME8_chr7_37843597_37905397	0/0	c0010	1767	14	10	0	4	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0011	1767	8	0	2	4	1	1	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0012	1767	7	0	0	7	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0013	1767	6	0	2	0	2	2	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0014	1767	5	0	0	4	0	1	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0015	1767	4	4	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0016	1767	4	0	2	1	0	1	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0017	1767	4	1	1	2	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0018	1767	4	0	0	4	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0019	1767	3	0	3	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0020	1767	3	0	1	2	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0021	1767	2	1	1	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0022	1767	2	1	0	0	0	1	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0023	1767	2	2	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0024	1767	2	0	0	2	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0025	1767	2	0	1	0	1	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0026	1767	2	0	2	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0027	1767	2	2	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0028	1767	2	0	0	1	0	1	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0029	1767	2	1	1	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0030	1767	1	0	0	1	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0031	1767	1	0	0	1	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0032	1767	1	0	0	1	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0033	1767	1	1	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0034	1767	1	1	0	0	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0035	1767	1	0	0	1	0	0	copy fasta	NME8	chr7	37843597	37905397
NME8_chr7_37843597_37905397	0/0	c0036	1767	1	0	0	0	0	1	copy fasta	NME8	chr7	37843597	37905397
NME9_chr3_138295999_138334851	0/1	c0001	993	167	50	36	53	7	20	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	1/0	c0002	993	99	36	13	32	5	12	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	c0003	993	5	5	0	0	0	0	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	c0004	993	3	1	2	0	0	0	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	c0005	993	1	0	1	0	0	0	copy fasta	NME9	chr3	138295999	138334851
NME9_chr3_138295999_138334851	0/0	c0006	993	1	0	0	1	0	0	copy fasta	NME9	chr3	138295999	138334851
NMI_chr2_151265470_151294668	1/0	c0001	924	193	30	16	126	5	15	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/1	c0002	924	116	3	29	66	3	14	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	c0003	924	59	27	10	15	2	5	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	c0004	924	23	20	2	1	0	0	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	c0005	924	15	0	9	0	2	4	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	c0006	924	3	3	0	0	0	0	copy fasta	NMI	chr2	151265470	151294668
NMI_chr2_151265470_151294668	0/0	c0007	924	1	1	0	0	0	0	copy fasta	NMI	chr2	151265470	151294668
NMNAT1_chr1_9938475_9990498	1/1	c0001	840	308	87	52	117	6	44	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	c0002	840	4	0	0	4	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	c0003	840	1	1	0	0	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT1_chr1_9938475_9990498	0/0	c0004	840	1	0	0	1	0	0	copy fasta	NMNAT1	chr1	9938475	9990498
NMNAT2_chr1_183243237_183423380	1/1	c0001	924	255	82	54	71	16	30	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	c0002	924	2	2	0	0	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT2_chr1_183243237_183423380	0/0	c0003	924	1	0	0	1	0	0	copy fasta	NMNAT2	chr1	183243237	183423380
NMNAT3_chr3_139555191_139682972	1/1	c0001	759	301	71	60	120	16	32	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	c0002	759	9	7	2	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	c0003	759	6	4	2	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972