JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NMNAT3_chr3_139555191_139682972	0/0	c0004	759	2	2	0	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	c0005	759	1	1	0	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	c0006	759	1	0	0	0	0	1	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	c0007	759	1	0	0	0	0	1	copy fasta	NMNAT3	chr3	139555191	139682972
NMNAT3_chr3_139555191_139682972	0/0	c0008	759	1	1	0	0	0	0	copy fasta	NMNAT3	chr3	139555191	139682972
NMRAL1_chr16_4456694_4479625	0/1	c0001	900	292	63	51	128	13	36	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0002	900	31	0	0	31	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0003	900	21	21	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0004	900	7	7	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0005	900	5	1	2	0	1	1	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0006	900	3	0	0	3	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0007	900	2	2	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0008	900	2	0	2	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0009	900	1	0	0	1	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0010	900	1	1	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0011	900	1	0	0	0	0	1	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0012	900	1	0	0	1	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0013	900	1	0	0	0	0	1	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0014	900	1	0	0	0	0	1	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0015	900	1	0	0	1	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0016	900	1	1	0	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0017	900	1	0	1	0	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRAL1_chr16_4456694_4479625	0/0	c0018	900	1	0	0	1	0	0	copy fasta	NMRAL1	chr16	4456694	4479625
NMRK1_chr9_75055577_75093155	0/0	c0001	600	261	68	55	111	5	22	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	1/1	c0002	600	153	22	24	66	13	26	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	c0003	600	3	2	1	0	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK1_chr9_75055577_75093155	0/0	c0004	600	1	0	0	1	0	0	copy fasta	NMRK1	chr9	75055577	75093155
NMRK2_chr19_3928069_3947416	1/0	c0001	693	355	71	66	163	16	38	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0002	693	14	13	1	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0003	693	11	0	11	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0004	693	6	6	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/1	c0005	693	5	0	3	0	0	1	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0006	693	4	4	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0007	693	2	2	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0008	653	1	0	0	1	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0009	693	1	0	0	1	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0010	693	1	0	0	0	0	1	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0011	693	1	1	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0012	693	1	1	0	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0013	693	1	0	1	0	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMRK2_chr19_3928069_3947416	0/0	c0014	693	1	0	0	1	0	0	copy fasta	NMRK2	chr19	3928069	3947416
NMS_chr2_100465482_100488280	0/1	c0001	462	219	61	35	94	4	24	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	0/0	c0002	462	118	25	17	56	4	16	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	1/0	c0003	462	44	11	22	0	4	6	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	0/0	c0004	462	12	0	0	12	0	0	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	0/0	c0005	462	1	1	0	0	0	0	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	0/0	c0006	462	1	0	0	1	0	0	copy fasta	NMS	chr2	100465482	100488280
NMS_chr2_100465482_100488280	0/0	c0007	462	1	0	0	1	0	0	copy fasta	NMS	chr2	100465482	100488280
NMT1_chr17_45056317_45114016	1/0	c0001	1491	161	39	37	63	7	14	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/1	c0002	1491	84	4	21	41	5	12	copy fasta	NMT1	chr17	45056317	45114016