JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NMT1_chr17_45056317_45114016	0/0	c0003	1491	71	14	13	35	0	9	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	c0004	1491	67	35	11	6	4	11	copy fasta	NMT1	chr17	45056317	45114016
NMT1_chr17_45056317_45114016	0/0	c0005	1491	3	0	0	3	0	0	copy fasta	NMT1	chr17	45056317	45114016
NMT2_chr10_15100770_15173693	1/1	c0001	1497	233	60	48	89	12	22	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	c0002	1497	24	23	1	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	c0003	1497	5	0	0	5	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	c0004	1497	4	3	1	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	c0005	1497	4	4	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	c0006	1497	3	3	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	c0007	1497	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	c0008	1497	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMT2_chr10_15100770_15173693	0/0	c0009	1497	1	1	0	0	0	0	copy fasta	NMT2	chr10	15100770	15173693
NMUR1_chr2_231518187_231535445	1/1	c0001	1281	406	84	74	184	18	44	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0002	1281	4	0	0	4	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0003	1281	4	0	0	4	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0004	1281	3	3	0	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0005	1281	2	0	0	2	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0006	1281	2	2	0	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0007	1281	1	1	0	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0008	1281	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0009	1281	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0010	1281	1	0	1	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0011	1281	1	0	1	0	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0012	1281	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR1_chr2_231518187_231535445	0/0	c0013	1267	1	0	0	1	0	0	copy fasta	NMUR1	chr2	231518187	231535445
NMUR2_chr5_152386546_152410279	0/1	c0001	1248	266	56	32	142	8	27	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0002	1248	112	25	17	53	7	10	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0003	1248	41	3	26	3	1	8	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0004	1248	9	8	1	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0005	1248	7	0	0	5	0	2	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0006	1248	2	0	1	0	0	1	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0007	1248	1	1	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0008	1248	1	0	0	1	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0009	1248	1	0	1	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	1/0	c0010	1248	1	0	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0011	1248	1	1	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0012	1248	1	0	0	1	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0013	1248	1	1	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0014	1248	1	1	0	0	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMUR2_chr5_152386546_152410279	0/0	c0015	1248	1	0	0	1	0	0	copy fasta	NMUR2	chr5	152386546	152410279
NMU_chr4_55590231_55641298	1/1	c0001	525	234	61	42	99	7	23	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	c0002	525	87	15	14	35	9	14	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	c0003	525	68	8	15	41	0	4	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	c0004	525	6	1	3	0	2	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	c0005	525	6	6	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	c0006	525	5	5	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	c0007	525	1	1	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	c0008	525	1	1	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	c0009	525	1	1	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	c0010	525	1	0	0	0	0	1	copy fasta	NMU	chr4	55590231	55641298