JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NMU_chr4_55590231_55641298	0/0	c0011	525	1	0	0	1	0	0	copy fasta	NMU	chr4	55590231	55641298
NMU_chr4_55590231_55641298	0/0	c0012	525	1	1	0	0	0	0	copy fasta	NMU	chr4	55590231	55641298
NNAT_chr20_37516250_37528690	1/1	c0001	246	407	96	82	184	7	36	copy fasta	NNAT	chr20	37516250	37528690
NNAT_chr20_37516250_37528690	0/0	c0002	246	1	0	0	0	1	0	copy fasta	NNAT	chr20	37516250	37528690
NNMT_chr11_114291399_114318536	1/1	c0001	795	420	98	73	188	10	49	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	c0002	795	2	2	0	0	0	0	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	c0003	795	1	0	1	0	0	0	copy fasta	NNMT	chr11	114291399	114318536
NNMT_chr11_114291399_114318536	0/0	c0004	795	1	0	0	0	0	1	copy fasta	NNMT	chr11	114291399	114318536
NNT_chr5_43598180_43712396	0/0	c0001	3261	81	45	19	4	1	12	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	1/1	c0002	3261	47	5	8	24	1	7	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0003	3261	22	0	3	15	0	4	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0004	3261	17	13	1	0	0	3	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0005	3261	5	4	1	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0006	3261	5	0	0	3	0	2	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0007	3261	2	2	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0008	3261	1	0	0	1	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0009	3261	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0010	3261	1	0	0	0	0	1	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0011	3261	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0012	3261	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0013	3261	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0014	3261	1	1	0	0	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0015	3261	1	0	0	1	0	0	copy fasta	NNT	chr5	43598180	43712396
NNT_chr5_43598180_43712396	0/0	c0016	3261	1	0	0	0	0	1	copy fasta	NNT	chr5	43598180	43712396
NOA1_chr4_56958350_56982606	0/1	c0001	2097	324	70	59	139	13	42	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0002	2097	53	0	17	35	0	1	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0003	2097	6	6	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0004	2097	4	4	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0005	2097	3	3	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0006	2097	3	0	0	0	1	2	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0007	2097	3	3	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0008	2097	3	3	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0009	2097	2	2	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0010	2097	1	1	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0011	2076	1	0	0	1	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0012	2097	1	0	1	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0013	2097	1	0	0	0	0	1	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0014	2097	1	0	0	1	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0015	2097	1	0	0	1	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0016	2097	1	0	0	1	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	1/0	c0017	2097	1	0	0	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOA1_chr4_56958350_56982606	0/0	c0018	2097	1	0	1	0	0	0	copy fasta	NOA1	chr4	56958350	56982606
NOB1_chr16_69736871_69759926	0/0	c0001	1239	288	70	32	156	5	25	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/1	c0002	1239	134	12	33	61	8	19	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	c0003	1239	8	0	6	0	1	1	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	c0004	1239	7	6	1	0	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	c0005	1239	4	4	0	0	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	c0006	1239	2	0	1	0	1	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	c0007	1239	1	0	0	0	1	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	c0008	1239	1	0	1	0	0	0	copy fasta	NOB1	chr16	69736871	69759926