JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOB1_chr16_69736871_69759926	0/0	c0009	1239	1	0	0	0	0	1	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	c0010	1239	1	0	0	1	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	c0011	1239	1	0	0	1	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOB1_chr16_69736871_69759926	0/0	c0012	1239	1	0	0	1	0	0	copy fasta	NOB1	chr16	69736871	69759926
NOBOX_chr7_144392240_144415227	0/1	c0001	2076	167	33	27	82	3	21	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	1/0	c0002	2076	110	32	25	37	3	12	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0003	2076	30	2	10	6	4	8	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0004	2076	9	9	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0005	2076	8	7	1	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0006	2076	6	6	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0007	2076	4	1	2	0	1	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0008	2076	3	2	1	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0009	2076	3	0	2	0	0	1	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0010	2076	2	2	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0011	2076	2	2	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0012	2076	2	0	1	0	1	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0013	2076	1	1	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0014	2076	1	0	0	1	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0015	2076	1	0	1	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0016	2076	1	0	1	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0017	2076	1	0	1	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOBOX_chr7_144392240_144415227	0/0	c0018	2076	1	1	0	0	0	0	copy fasta	NOBOX	chr7	144392240	144415227
NOC2L_chr1_939203_964256	0/0	c0001	2250	208	73	47	66	7	15	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/1	c0002	2250	152	5	24	94	7	21	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0003	2250	20	3	6	8	0	3	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0004	2250	9	0	3	0	2	4	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	1/0	c0005	2250	8	7	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0006	2250	3	3	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0007	2250	3	0	0	0	0	3	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0008	2250	2	0	2	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0009	2250	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0010	2250	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0011	2250	1	1	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0012	2250	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0013	2250	1	1	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0014	2250	1	1	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0015	2250	1	1	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0016	2250	1	0	1	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0017	2250	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0018	2250	1	0	0	0	0	1	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0019	2250	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0020	2250	1	0	1	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0021	2250	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0022	2250	1	0	0	0	0	1	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0023	2250	1	1	0	0	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0024	2250	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC2L_chr1_939203_964256	0/0	c0025	2250	1	0	0	1	0	0	copy fasta	NOC2L	chr1	939203	964256
NOC3L_chr10_94328226_94367939	1/1	c0001	2403	170	34	35	72	11	16	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0002	2403	90	11	6	59	1	13	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0003	2403	38	0	6	28	2	2	copy fasta	NOC3L	chr10	94328226	94367939