JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOC3L_chr10_94328226_94367939	0/0	c0004	2403	27	10	7	0	2	8	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0005	2403	17	17	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0006	2403	7	0	0	7	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0007	2403	4	4	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0008	2403	3	2	1	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0009	2403	3	3	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0010	2403	3	3	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0011	2403	2	2	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0012	2403	2	2	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0013	2403	1	1	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0014	2403	1	1	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0015	2403	1	0	0	0	1	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0016	2403	1	0	1	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0017	2403	1	1	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0018	2403	1	0	0	1	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0019	2403	1	1	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0020	2403	1	0	0	1	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0021	2403	1	0	0	1	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0022	2403	1	0	0	0	1	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0023	2403	1	1	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0024	2403	1	0	0	1	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0025	2403	1	0	0	0	0	1	copy fasta	NOC3L	chr10	94328226	94367939
NOC3L_chr10_94328226_94367939	0/0	c0026	2403	1	1	0	0	0	0	copy fasta	NOC3L	chr10	94328226	94367939
NOC4L_chr12_132139457_132157468	1/1	c0001	1551	174	48	50	53	7	14	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0002	1546	29	9	2	12	1	5	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0003	1551	27	0	0	24	0	3	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0004	1551	7	7	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0005	1551	5	5	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0006	1551	5	1	1	0	1	2	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0007	1551	3	2	0	0	1	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0008	1552	3	0	0	3	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0009	1546	3	0	0	3	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0010	1551	2	0	1	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0011	1639	2	0	0	2	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0012	1595	2	0	1	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0013	1546	2	0	0	2	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0014	1551	1	0	0	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0015	1551	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0016	1546	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0017	1551	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0018	1551	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0019	1551	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0020	1552	1	0	1	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0021	1551	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0022	1551	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0023	1551	1	0	0	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0024	1551	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0025	1551	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0026	1551	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0027	1551	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468