JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOC4L_chr12_132139457_132157468	0/0	c0028	1813	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0029	1683	1	0	1	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0030	1771	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0031	3648	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0032	1815	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0033	1859	1	0	0	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0034	2123	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0035	1552	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0036	1595	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0037	1547	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0038	1547	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0039	1546	1	0	0	1	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0040	1551	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0041	1551	1	1	0	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0042	1551	1	0	0	0	0	1	copy fasta	NOC4L	chr12	132139457	132157468
NOC4L_chr12_132139457_132157468	0/0	c0043	1552	1	0	1	0	0	0	copy fasta	NOC4L	chr12	132139457	132157468
NOCT_chr4_139010781_139050939	1/1	c0001	1296	350	82	68	143	16	39	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	c0002	1296	21	5	0	16	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	c0003	1296	6	6	0	0	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	c0004	1296	4	0	1	0	0	3	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	c0005	1296	1	0	1	0	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	c0006	1296	1	0	0	1	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOCT_chr4_139010781_139050939	0/0	c0007	1296	1	1	0	0	0	0	copy fasta	NOCT	chr4	139010781	139050939
NOD1_chr7_30419527_30483784	1/1	c0001	2862	173	21	39	79	9	23	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0002	2862	115	21	10	66	2	16	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0003	2862	18	15	2	1	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0004	2862	16	14	1	1	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0005	2862	6	6	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0006	2862	5	4	1	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0007	2862	4	4	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0008	2862	3	3	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0009	2862	2	2	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0010	2862	2	0	0	2	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0011	2862	2	2	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0012	2862	1	0	0	0	0	1	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0013	2862	1	1	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0014	2862	1	0	1	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0015	2862	1	0	0	1	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0016	2862	1	0	0	0	1	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0017	2862	1	0	0	0	0	1	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0018	2862	1	0	0	0	0	1	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0019	2862	1	0	0	0	0	1	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0020	2862	1	0	0	1	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0021	2862	1	0	0	1	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0022	2862	1	0	0	0	0	1	copy fasta	NOD1	chr7	30419527	30483784
NOD1_chr7_30419527_30483784	0/0	c0023	2862	1	1	0	0	0	0	copy fasta	NOD1	chr7	30419527	30483784
NOD2_chr16_50688606_50738075	1/0	c0001	3042	153	38	28	66	5	15	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0002	3042	35	8	3	23	0	1	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0003	3042	30	19	3	7	1	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0004	3042	27	5	13	0	4	5	copy fasta	NOD2	chr16	50688606	50738075