JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOD2_chr16_50688606_50738075	0/0	c0005	3042	18	2	10	1	1	4	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0006	3042	10	0	6	0	4	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0007	3042	6	6	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0008	3042	4	4	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0009	3042	3	3	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0010	3042	3	0	2	0	0	1	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0011	3042	3	3	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0012	3042	2	2	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0013	3042	2	0	2	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0014	3042	2	2	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0015	3042	1	0	0	1	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0016	3042	1	0	0	0	1	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0017	3042	1	0	0	1	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0018	3042	1	0	0	1	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0019	3042	1	1	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0020	3042	1	1	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0021	3042	1	0	1	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0022	3042	1	0	1	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0023	3042	1	0	0	0	1	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0024	3042	1	0	0	0	1	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/1	c0025	3042	1	0	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0026	3042	1	1	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0027	3042	1	1	0	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NOD2_chr16_50688606_50738075	0/0	c0028	3042	1	0	1	0	0	0	copy fasta	NOD2	chr16	50688606	50738075
NODAL_chr10_70426936_70446681	0/1	c0001	1044	308	40	51	176	7	33	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	1/0	c0002	1044	111	48	31	13	7	11	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	c0003	1044	5	0	0	5	0	0	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	c0004	1044	4	4	0	0	0	0	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	c0005	1044	4	4	0	0	0	0	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	c0006	1044	1	0	0	1	0	0	copy fasta	NODAL	chr10	70426936	70446681
NODAL_chr10_70426936_70446681	0/0	c0007	1044	1	0	0	1	0	0	copy fasta	NODAL	chr10	70426936	70446681
NOG_chr17_56588699_56600611	1/1	c0001	699	347	78	69	144	14	40	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	c0002	699	6	5	1	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOG_chr17_56588699_56600611	0/0	c0003	699	3	3	0	0	0	0	copy fasta	NOG	chr17	56588699	56600611
NOL10_chr2_10565754_10694975	1/1	c0001	2067	187	39	33	77	6	30	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0002	2067	115	36	24	49	2	4	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0003	2067	46	1	13	24	2	6	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0004	2067	7	0	3	4	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0005	2067	6	6	0	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0006	2067	4	3	1	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0007	2067	2	2	0	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0008	2067	1	1	0	0	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0009	2067	1	0	0	1	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0010	2067	1	0	0	1	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0011	2067	1	0	0	1	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL10_chr2_10565754_10694975	0/0	c0012	2067	1	0	0	1	0	0	copy fasta	NOL10	chr2	10565754	10694975
NOL11_chr17_67712936_67749531	0/0	c0001	2160	156	28	34	76	4	14	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	1/0	c0002	2160	115	45	22	21	4	22	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0003	2160	55	0	2	52	0	1	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/1	c0004	2160	40	5	6	26	2	0	copy fasta	NOL11	chr17	67712936	67749531