JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOL11_chr17_67712936_67749531	0/0	c0005	2160	10	9	1	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0006	2160	2	2	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0007	2160	2	0	0	2	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0008	2160	2	2	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0009	2160	2	0	0	2	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0010	2160	1	0	0	1	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0011	2160	1	0	1	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0012	2160	1	1	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0013	2160	1	1	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0014	2160	1	0	1	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0015	2242	1	0	0	1	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0016	2160	1	0	0	0	0	1	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0017	2160	1	0	0	1	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0018	2160	1	0	1	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL11_chr17_67712936_67749531	0/0	c0019	2160	1	1	0	0	0	0	copy fasta	NOL11	chr17	67712936	67749531
NOL12_chr22_37681343_37698474	1/1	c0001	642	412	87	68	197	16	42	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	c0002	642	8	6	2	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	c0003	642	2	2	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	c0004	642	1	0	0	1	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL12_chr22_37681343_37698474	0/0	c0005	642	1	1	0	0	0	0	copy fasta	NOL12	chr22	37681343	37698474
NOL3_chr16_67165538_67180737	1/1	c0001	627	293	93	59	92	10	37	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	c0002	627	2	0	1	0	0	1	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	c0003	627	2	0	0	2	0	0	copy fasta	NOL3	chr16	67165538	67180737
NOL3_chr16_67165538_67180737	0/0	c0004	627	1	1	0	0	0	0	copy fasta	NOL3	chr16	67165538	67180737
NOL4L_chr20_32438059_32590333	1/1	c0001	2043	172	62	48	26	6	28	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	c0002	2043	9	6	3	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	c0003	2043	4	4	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	c0004	2043	4	3	1	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	c0005	2043	3	3	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	c0006	2043	1	0	0	1	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	c0007	2043	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	c0008	2043	1	1	0	0	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4L_chr20_32438059_32590333	0/0	c0009	2043	1	0	0	1	0	0	copy fasta	NOL4L	chr20	32438059	32590333
NOL4_chr18_33846100_34229913	1/1	c0001	1917	162	50	28	60	8	14	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	c0002	1917	1	0	0	1	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	c0003	1917	1	1	0	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	c0004	1917	1	1	0	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	c0005	1917	1	1	0	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	c0006	1917	1	1	0	0	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL4_chr18_33846100_34229913	0/0	c0007	1917	1	0	0	1	0	0	copy fasta	NOL4	chr18	33846100	34229913
NOL6_chr9_33456353_33478924	1/1	c0001	3441	307	55	64	148	11	27	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0002	3441	88	19	9	47	4	9	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0003	3441	6	6	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0004	3441	3	0	0	0	0	3	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0005	3441	3	3	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0006	3441	2	0	2	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0007	3441	2	0	2	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0008	3441	2	2	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0009	3441	2	0	0	0	2	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0010	3441	2	0	0	1	0	1	copy fasta	NOL6	chr9	33456353	33478924