JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOL6_chr9_33456353_33478924	0/0	c0011	3441	2	0	0	2	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0012	3441	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0013	3441	1	0	1	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0014	3441	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0015	3441	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0016	3441	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0017	3441	1	0	0	0	1	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0018	3441	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0019	3441	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0020	3441	1	0	1	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0021	3441	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0022	3441	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0023	3441	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0024	3441	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0025	3441	1	0	0	0	0	1	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0026	3441	1	0	0	1	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0027	3441	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0028	3441	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0029	3441	1	1	0	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL6_chr9_33456353_33478924	0/0	c0030	3441	1	0	1	0	0	0	copy fasta	NOL6	chr9	33456353	33478924
NOL7_chr6_13610335_13626712	1/1	c0001	774	399	85	80	178	16	38	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	c0002	774	38	6	4	24	0	4	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	c0003	774	6	0	0	6	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	c0004	774	4	4	0	0	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	c0005	774	2	2	0	0	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	c0006	774	1	1	0	0	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	c0007	774	1	0	0	1	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL7_chr6_13610335_13626712	0/0	c0008	765	1	0	0	1	0	0	copy fasta	NOL7	chr6	13610335	13626712
NOL8_chr9_92292358_92330350	1/1	c0001	3504	220	12	52	122	8	24	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0002	3504	124	58	15	35	5	11	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0003	3504	22	1	3	13	1	4	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0004	3504	12	10	2	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0005	3504	5	5	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0006	3504	3	0	0	3	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0007	3504	2	0	1	0	0	1	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0008	3504	2	0	0	0	2	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0009	3504	2	0	0	0	2	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0010	3504	2	2	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0011	3504	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0012	3504	1	0	0	0	0	1	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0013	3504	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0014	3504	1	0	0	1	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0015	3504	1	0	0	0	0	1	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0016	3504	1	0	0	1	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0017	3504	1	0	0	1	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0018	3504	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0019	3504	1	0	0	1	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0020	3504	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0021	3504	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0022	3504	1	1	0	0	0	0	copy fasta	NOL8	chr9	92292358	92330350