JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APOBEC3F_chr22_39035864_39060972	0/0	c0009	1122	3	0	0	3	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0010	1122	2	2	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0011	1122	2	0	0	2	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0012	1122	2	2	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0013	1122	1	0	0	0	0	1	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0014	1122	1	0	1	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0015	1122	1	0	0	0	0	1	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0016	1122	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0017	1122	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0018	1122	1	0	1	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0019	1122	1	0	0	1	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3F_chr22_39035864_39060972	0/0	c0020	1122	1	1	0	0	0	0	copy fasta	APOBEC3F	chr22	39035864	39060972
APOBEC3G_chr22_39072275_39092743	1/1	c0001	1155	217	37	29	121	9	19	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0002	1155	114	2	31	58	6	17	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0003	1155	52	29	5	14	3	1	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0004	1155	25	14	5	5	0	1	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0005	1155	4	4	0	0	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0006	1155	3	2	1	0	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0007	1155	1	0	0	1	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0008	1155	1	0	0	1	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0009	1155	1	0	1	0	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0010	1155	1	1	0	0	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0011	1155	1	0	0	1	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0012	1155	1	0	0	1	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0013	1155	1	0	0	0	0	1	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0014	1155	1	1	0	0	0	0	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3G_chr22_39072275_39092743	0/0	c0015	1155	1	0	0	0	0	1	copy fasta	APOBEC3G	chr22	39072275	39092743
APOBEC3H_chr22_39092244_39109067	1/0	c0001	552	210	15	51	110	6	27	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/1	c0002	552	67	36	7	18	3	2	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0003	549	64	26	5	27	1	5	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0004	549	54	8	15	18	4	9	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0005	552	3	0	0	3	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0006	549	3	3	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0007	549	3	0	2	0	0	1	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0008	549	3	0	0	3	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0009	552	2	2	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0010	552	2	2	0	0	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0011	552	2	0	0	2	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0012	549	2	0	0	2	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0013	552	1	0	0	1	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0014	552	1	0	0	1	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC3H_chr22_39092244_39109067	0/0	c0015	552	1	0	0	1	0	0	copy fasta	APOBEC3H	chr22	39092244	39109067
APOBEC4_chr1_183641275_183658316	1/1	c0001	1104	201	37	37	102	6	17	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0002	1104	90	29	18	29	4	10	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0003	1104	41	1	11	15	4	10	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0004	1104	24	12	1	10	0	1	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0005	1104	8	7	1	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0006	1104	5	5	0	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0007	1104	3	2	1	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0008	1104	1	0	1	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316