JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOL8_chr9_92292358_92330350	0/0	c0023	3504	1	0	1	0	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL8_chr9_92292358_92330350	0/0	c0024	3504	1	0	0	1	0	0	copy fasta	NOL8	chr9	92292358	92330350
NOL9_chr1_6516347_6559513	0/1	c0001	2109	214	40	54	90	8	21	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0002	2109	60	10	8	34	2	6	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0003	2109	14	13	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0004	2109	13	13	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0005	2109	7	3	0	2	0	2	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	1/0	c0006	2109	7	6	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0007	2109	6	0	0	6	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0008	2109	5	5	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0009	2109	4	0	0	3	0	1	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0010	2109	3	2	1	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0011	2109	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0012	2109	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0013	2097	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0014	2109	1	1	0	0	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0015	2109	1	0	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0016	2109	1	0	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOL9_chr1_6516347_6559513	0/0	c0017	2109	1	0	0	1	0	0	copy fasta	NOL9	chr1	6516347	6559513
NOLC1_chr10_102147389_102168870	1/1	c0001	2100	335	40	61	184	14	34	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0002	2100	48	35	8	0	2	3	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0003	2100	7	6	1	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0004	2100	5	4	1	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0005	2100	3	3	0	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0006	2100	2	0	0	2	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0007	2100	1	0	0	0	0	1	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0008	2100	1	1	0	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0009	2100	1	0	1	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0010	2100	1	0	0	1	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0011	2100	1	0	0	1	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0012	2100	1	0	0	0	0	1	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0013	2100	1	0	0	0	0	1	copy fasta	NOLC1	chr10	102147389	102168870
NOLC1_chr10_102147389_102168870	0/0	c0014	2100	1	1	0	0	0	0	copy fasta	NOLC1	chr10	102147389	102168870
NOM1_chr7_156944712_156978176	0/1	c0001	2583	128	30	35	36	11	15	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	1/0	c0002	2583	84	16	9	45	1	12	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0003	2583	70	0	13	45	5	7	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0004	2583	42	0	2	37	1	2	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0005	2583	11	0	0	11	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0006	2583	10	0	0	10	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0007	2583	9	6	3	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0008	2580	8	7	1	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0009	2583	7	7	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0010	2583	7	0	3	0	0	4	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0011	2583	5	0	0	5	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0012	2583	5	5	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0013	2583	4	3	1	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0014	2583	3	3	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0015	2583	3	3	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0016	2583	2	0	0	0	0	2	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0017	2583	2	1	1	0	0	0	copy fasta	NOM1	chr7	156944712	156978176