JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOM1_chr7_156944712_156978176	0/0	c0018	2583	2	2	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0019	2583	2	2	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0020	2583	2	0	2	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0021	2583	2	0	2	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0022	2583	2	0	0	0	0	2	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0023	2583	2	2	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0024	2583	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0025	2583	1	1	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0026	2583	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0027	2583	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0028	2583	1	1	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0029	2583	1	0	0	0	0	1	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0030	2583	1	1	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0031	2583	1	1	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0032	2583	1	1	0	0	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0033	2583	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0034	2583	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0035	2583	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0036	2583	1	0	0	1	0	0	copy fasta	NOM1	chr7	156944712	156978176
NOM1_chr7_156944712_156978176	0/0	c0037	2583	1	0	0	0	0	1	copy fasta	NOM1	chr7	156944712	156978176
NOMO1_chr16_14828721_14901157	0/1	c0001	3669	201	42	45	76	6	31	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0002	3669	49	3	0	37	1	8	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0003	3669	20	5	0	15	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0004	3669	12	3	8	1	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0005	3669	7	0	0	7	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0006	3669	5	0	1	0	1	3	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0007	3669	5	0	0	5	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0008	3669	5	0	0	5	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0009	3669	5	0	2	3	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0010	3669	4	3	1	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0011	3669	3	1	2	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0012	3669	2	2	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0013	3669	2	0	1	0	0	1	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0014	3669	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0015	3669	1	0	1	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0016	3669	1	0	0	0	0	1	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0017	3669	1	0	0	1	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0018	3669	1	0	0	1	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0019	3669	1	0	1	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0020	3669	1	0	0	0	0	1	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0021	3669	1	0	0	1	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0022	3669	1	0	0	0	0	1	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0023	3669	1	0	0	1	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0024	3669	1	0	0	1	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0025	3669	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0026	3669	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0027	3669	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0028	3669	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0029	3669	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157
NOMO1_chr16_14828721_14901157	0/0	c0030	3669	1	1	0	0	0	0	copy fasta	NOMO1	chr16	14828721	14901157