JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOMO2_chr16_18494927_18567097	0/0	c0001	3669	9	1	1	1	0	6	copy fasta	NOMO2	chr16	18494927	18567097
NOMO2_chr16_18494927_18567097	0/0	c0002	3669	4	0	1	1	0	2	copy fasta	NOMO2	chr16	18494927	18567097
NOMO2_chr16_18494927_18567097	0/0	c0003	3669	1	0	0	0	0	1	copy fasta	NOMO2	chr16	18494927	18567097
NOMO2_chr16_18494927_18567097	0/0	c0004	3669	1	1	0	0	0	0	copy fasta	NOMO2	chr16	18494927	18567097
NOMO2_chr16_18494927_18567097	0/0	c0005	3669	1	0	0	0	0	1	copy fasta	NOMO2	chr16	18494927	18567097
NOMO3_chr16_16227528_16299811	0/0	c0001	3669	63	10	27	10	3	13	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0002	3669	21	1	6	13	1	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0003	3669	16	3	4	5	2	2	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0004	3669	4	0	3	1	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0005	3669	3	0	0	3	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0006	3669	3	0	1	0	1	1	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0007	3669	2	0	0	0	1	1	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0008	3669	2	2	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0009	3669	2	0	1	0	0	1	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0010	3669	1	0	0	1	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0011	3684	1	0	1	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0012	3669	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0013	3669	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0014	3669	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0015	3669	1	0	0	1	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0016	3669	1	0	1	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0017	3669	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0018	3669	1	0	1	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0019	3669	1	0	0	1	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0020	3669	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0021	3669	1	0	1	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0022	3669	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0023	3669	1	0	0	1	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0024	3669	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NOMO3_chr16_16227528_16299811	0/0	c0025	3669	1	1	0	0	0	0	copy fasta	NOMO3	chr16	16227528	16299811
NONO_chrX_71278635_71306168	1/1	c0001	1416	217	47	42	92	7	27	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	c0002	1416	8	8	0	0	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	c0003	1416	1	0	1	0	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	c0004	1416	1	0	0	1	0	0	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	c0005	1416	1	0	0	0	0	1	copy fasta	NONO	chrX	71278635	71306168
NONO_chrX_71278635_71306168	0/0	c0006	1416	1	1	0	0	0	0	copy fasta	NONO	chrX	71278635	71306168
NOP10_chr15_34336719_34348136	1/0	c0001	195	449	98	78	210	16	46	copy fasta	NOP10	chr15	34336719	34348136
NOP14_chr4_2932936_2968406	1/0	c0001	2574	251	31	45	135	8	31	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0002	2574	120	48	26	26	10	10	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0003	2574	10	8	2	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0004	2574	4	0	0	4	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0005	2574	3	0	0	3	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0006	2574	3	0	1	0	0	2	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0007	2574	2	2	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0008	2574	2	1	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/1	c0009	2574	2	0	0	0	0	1	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0010	2574	2	0	0	2	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0011	2574	2	0	0	2	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0012	2574	2	2	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0013	2574	2	0	0	2	0	0	copy fasta	NOP14	chr4	2932936	2968406