JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOP14_chr4_2932936_2968406	0/0	c0014	2574	1	0	0	0	0	1	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0015	2574	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0016	2574	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0017	2574	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0018	2574	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0019	2587	1	0	0	1	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0020	2574	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0021	2574	1	0	0	0	0	1	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0022	2574	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0023	2574	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0024	2574	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0025	2574	1	0	0	1	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0026	2574	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0027	2574	1	0	1	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0028	2574	1	0	0	0	0	1	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0029	2574	1	0	0	0	0	1	copy fasta	NOP14	chr4	2932936	2968406
NOP14_chr4_2932936_2968406	0/0	c0030	2574	1	1	0	0	0	0	copy fasta	NOP14	chr4	2932936	2968406
NOP16_chr5_176378946_176393598	1/1	c0001	537	416	84	73	197	17	43	copy fasta	NOP16	chr5	176378946	176393598
NOP16_chr5_176378946_176393598	0/0	c0002	537	17	14	1	0	1	1	copy fasta	NOP16	chr5	176378946	176393598
NOP16_chr5_176378946_176393598	0/0	c0003	537	1	0	0	1	0	0	copy fasta	NOP16	chr5	176378946	176393598
NOP2_chr12_6551871_6573291	1/1	c0001	2439	383	76	73	172	16	44	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0002	2439	12	0	0	12	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0003	2439	9	9	0	0	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0004	2439	8	7	1	0	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0005	2439	2	0	0	2	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0006	2439	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0007	2439	1	1	0	0	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0008	2439	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0009	2439	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0010	2439	1	1	0	0	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0011	2439	1	0	0	0	0	1	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0012	2439	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0013	2439	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0014	2439	1	0	0	1	0	0	copy fasta	NOP2	chr12	6551871	6573291
NOP2_chr12_6551871_6573291	0/0	c0015	2439	1	0	0	0	0	1	copy fasta	NOP2	chr12	6551871	6573291
NOP53_chr19_47740546_47762058	0/0	c0001	1437	160	5	32	89	5	29	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	1/1	c0002	1437	115	9	21	72	2	9	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0003	1437	25	24	1	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0004	1437	23	18	5	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0005	1437	11	1	5	0	5	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0006	1437	10	1	4	0	2	3	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0007	1437	9	9	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0008	1437	8	8	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0009	1437	5	5	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0010	1437	5	5	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0011	1437	4	0	0	2	0	2	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0012	1437	4	4	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0013	1437	4	4	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0014	1437	3	3	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0015	1437	2	0	1	1	0	0	copy fasta	NOP53	chr19	47740546	47762058