JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOP53_chr19_47740546_47762058	0/0	c0016	1437	2	0	0	2	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0017	1437	2	0	0	0	0	2	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0018	1437	2	0	2	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0019	1437	1	0	0	0	1	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0020	1437	1	0	0	1	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0021	1437	1	0	0	0	1	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0022	1437	1	1	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0023	1437	1	0	0	0	0	1	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0024	1437	1	0	1	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0025	1437	1	0	0	1	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0026	1437	1	0	0	1	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0027	1437	1	1	0	0	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP53_chr19_47740546_47762058	0/0	c0028	1409	1	0	0	1	0	0	copy fasta	NOP53	chr19	47740546	47762058
NOP56_chr20_2647632_2663393	0/1	c0001	1785	155	17	27	82	6	22	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0002	1785	82	11	17	43	4	7	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0003	1785	65	40	19	3	2	1	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0004	1785	64	2	10	46	1	5	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	1/0	c0005	1785	52	3	10	28	5	5	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0006	1785	7	4	0	0	0	3	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0007	1785	5	5	0	0	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0008	1785	4	0	0	3	0	1	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0009	1785	3	3	0	0	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0010	1785	2	0	1	0	0	1	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0011	1785	2	2	0	0	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0012	1785	1	1	0	0	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0013	1785	1	0	0	1	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0014	1785	1	1	0	0	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0015	1785	1	1	0	0	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0016	1785	1	1	0	0	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0017	1785	1	1	0	0	0	0	copy fasta	NOP56	chr20	2647632	2663393
NOP56_chr20_2647632_2663393	0/0	c0018	1785	1	0	0	0	0	1	copy fasta	NOP56	chr20	2647632	2663393
NOP58_chr2_202260763_202308661	1/1	c0001	1590	256	75	59	86	10	24	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	c0002	1590	41	0	7	20	2	12	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	c0003	1590	3	0	3	0	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	c0004	1590	2	2	0	0	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	c0005	1590	1	1	0	0	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	c0006	1590	1	0	0	1	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	c0007	1590	1	0	1	0	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	c0008	1590	1	0	0	1	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	c0009	1590	1	1	0	0	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP58_chr2_202260763_202308661	0/0	c0010	1590	1	1	0	0	0	0	copy fasta	NOP58	chr2	202260763	202308661
NOP9_chr14_24294850_24314124	0/1	c0001	1911	162	15	18	100	7	21	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0002	1917	88	17	20	31	5	15	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	1/0	c0003	1911	51	14	3	33	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0004	1914	42	8	24	0	4	6	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0005	1914	34	16	4	11	0	3	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0006	1914	6	6	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0007	1914	4	4	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0008	1911	4	0	0	4	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0009	1917	3	3	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124