JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOP9_chr14_24294850_24314124	0/0	c0010	1914	2	2	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0011	1911	2	0	0	2	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0012	1914	2	1	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0013	1914	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0014	1917	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0015	1914	1	0	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0016	1911	1	0	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0017	1911	1	0	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0018	1911	1	0	0	0	0	1	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0019	1911	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0020	1911	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0021	1911	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0022	1911	1	1	0	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0023	1914	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0024	1917	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0025	1911	1	0	0	1	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOP9_chr14_24294850_24314124	0/0	c0026	1914	1	0	1	0	0	0	copy fasta	NOP9	chr14	24294850	24314124
NOPCHAP1_chr12_104981316_105022625	1/1	c0001	558	212	27	50	89	10	34	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	c0002	558	181	54	16	97	4	10	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	c0003	558	39	8	2	29	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	c0004	558	4	0	0	4	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	c0005	558	2	2	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	c0006	558	2	0	2	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	c0007	558	1	0	0	1	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOPCHAP1_chr12_104981316_105022625	0/0	c0008	558	1	1	0	0	0	0	copy fasta	NOPCHAP1	chr12	104981316	105022625
NOS1AP_chr1_162064691_162375475	1/0	c0001	1521	71	25	22	18	1	4	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/1	c0002	1521	58	11	12	27	0	7	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	c0003	1521	33	23	5	3	0	2	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	c0004	1521	14	9	1	2	1	1	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	c0005	1521	3	3	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	c0006	1521	2	2	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1AP_chr1_162064691_162375475	0/0	c0007	1521	1	1	0	0	0	0	copy fasta	NOS1AP	chr1	162064691	162375475
NOS1_chr12_117203142_117366626	0/1	c0001	4305	103	29	22	33	5	13	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0002	4305	39	13	1	22	1	2	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0003	4305	26	5	8	8	1	4	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0004	4305	25	1	13	5	2	4	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0005	4305	22	3	1	17	0	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0006	4305	11	3	0	7	0	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0007	4305	10	0	0	10	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	1/0	c0008	4305	9	3	2	1	1	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0009	4305	8	7	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0010	4305	6	6	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0011	4305	3	3	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0012	4305	3	2	1	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0013	4305	2	0	0	0	0	2	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0014	4305	2	2	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0015	4305	2	2	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0016	4305	2	2	0	0	0	0	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0017	4305	1	0	0	0	0	1	copy fasta	NOS1	chr12	117203142	117366626
NOS1_chr12_117203142_117366626	0/0	c0018	4305	1	0	0	1	0	0	copy fasta	NOS1	chr12	117203142	117366626