JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOSTRIN_chr2_168797637_168870514	0/0	c0011	1521	1	1	0	0	0	0	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/0	c0012	1521	1	1	0	0	0	0	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/0	c0013	1521	1	1	0	0	0	0	copy fasta	NOSTRIN	chr2	168797637	168870514
NOSTRIN_chr2_168797637_168870514	0/0	c0014	1521	1	1	0	0	0	0	copy fasta	NOSTRIN	chr2	168797637	168870514
NOTCH1_chr9_136489433_136551048	0/0	c0001	7668	95	25	13	50	2	5	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	1/0	c0002	7668	27	4	13	5	0	4	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0003	7668	20	2	8	2	1	7	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/1	c0004	7668	13	6	3	1	0	2	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0005	7668	13	6	2	1	1	3	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0006	7668	13	1	3	4	1	4	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0007	7668	12	0	0	6	3	3	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0008	7668	12	3	1	4	1	3	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0009	7668	8	0	2	0	2	4	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0010	7668	7	0	7	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0011	7668	7	0	2	5	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0012	7668	6	0	1	4	0	1	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0013	7668	5	0	0	5	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0014	7668	5	1	1	0	0	3	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0015	7668	4	0	4	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0016	7668	4	4	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0017	7668	4	0	0	4	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0018	7668	3	1	0	1	0	1	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0019	7668	3	3	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0020	7668	3	0	2	0	0	1	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0021	7668	2	2	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0022	7668	2	0	0	0	0	2	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0023	7668	2	2	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0024	7668	2	0	0	1	0	1	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0025	7668	2	1	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0026	7668	2	1	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0027	7668	2	1	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0028	7668	2	1	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0029	7668	2	0	2	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0030	7668	2	2	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0031	7668	1	0	0	0	1	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0032	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0033	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0034	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0035	7668	1	0	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0036	7668	1	0	0	0	0	1	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0037	7668	1	0	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0038	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0039	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0040	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0041	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0042	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0043	7668	1	0	0	1	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0044	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0045	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0046	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048