JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOTCH1_chr9_136489433_136551048	0/0	c0047	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0048	7668	1	0	0	1	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0049	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0050	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0051	7668	1	0	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0052	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0053	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0054	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0055	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0056	7668	1	0	0	1	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0057	7668	1	0	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0058	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0059	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0060	7668	1	0	0	1	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0061	7668	1	0	0	1	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0062	7668	1	0	0	1	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0063	7668	1	0	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0064	7668	1	0	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0065	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0066	7668	1	0	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0067	7668	1	0	1	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0068	7668	1	0	0	0	0	1	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0069	7668	1	0	0	1	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH1_chr9_136489433_136551048	0/0	c0070	7668	1	1	0	0	0	0	copy fasta	NOTCH1	chr9	136489433	136551048
NOTCH2NLA_chr1_146143865_146234021	0/0	c0001	711	56	7	4	31	2	12	copy fasta	NOTCH2NLA	chr1	146143865	146234021
NOTCH2NLA_chr1_146143865_146234021	0/0	c0002	711	1	1	0	0	0	0	copy fasta	NOTCH2NLA	chr1	146143865	146234021
NOTCH2NLA_chr1_146143865_146234021	0/0	c0003	711	1	0	0	1	0	0	copy fasta	NOTCH2NLA	chr1	146143865	146234021
NOTCH2NLA_chr1_146143865_146234021	0/0	c0004	711	1	0	0	1	0	0	copy fasta	NOTCH2NLA	chr1	146143865	146234021
NOTCH2NLA_chr1_146143865_146234021	0/0	c0005	711	1	0	0	1	0	0	copy fasta	NOTCH2NLA	chr1	146143865	146234021
NOTCH2NLB_chr1_148595285_148684746	0/0	c0001	750	21	4	4	8	0	5	copy fasta	NOTCH2NLB	chr1	148595285	148684746
NOTCH2NLB_chr1_148595285_148684746	0/0	c0002	750	7	0	3	3	0	1	copy fasta	NOTCH2NLB	chr1	148595285	148684746
NOTCH2NLB_chr1_148595285_148684746	0/0	c0003	750	4	0	1	3	0	0	copy fasta	NOTCH2NLB	chr1	148595285	148684746
NOTCH2NLB_chr1_148595285_148684746	0/0	c0004	750	3	3	0	0	0	0	copy fasta	NOTCH2NLB	chr1	148595285	148684746
NOTCH2NLB_chr1_148595285_148684746	0/0	c0005	750	1	1	0	0	0	0	copy fasta	NOTCH2NLB	chr1	148595285	148684746
NOTCH2NLC_chr1_149385621_149476833	0/0	c0001	888	50	1	8	36	1	4	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0002	903	31	5	7	13	0	6	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0003	900	19	10	2	7	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0004	906	15	3	5	1	1	5	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0005	882	13	2	1	6	2	2	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0006	909	12	1	1	10	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0007	912	12	6	2	4	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0008	915	10	1	3	5	0	1	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0009	891	8	2	1	3	0	2	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0010	894	8	3	3	2	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0011	897	6	1	1	2	0	2	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0012	885	5	0	1	2	1	1	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0013	921	5	0	2	3	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	1/0	c0014	882	4	0	2	0	0	1	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0015	888	4	4	0	0	0	0	copy fasta	NOTCH2NLC	chr1	149385621	149476833
NOTCH2NLC_chr1_149385621_149476833	0/0	c0016	927	4	0	0	2	1	1	copy fasta	NOTCH2NLC	chr1	149385621	149476833