JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APOBEC4_chr1_183641275_183658316	0/0	c0009	1104	1	0	0	0	0	1	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0010	1104	1	0	0	1	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0011	1104	1	0	0	1	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0012	1104	1	1	0	0	0	0	copy fasta	APOBEC4	chr1	183641275	183658316
APOBEC4_chr1_183641275_183658316	0/0	c0013	1104	1	0	0	0	0	1	copy fasta	APOBEC4	chr1	183641275	183658316
APOBR_chr16_28489643_28503964	0/0	c0001	3294	121	9	21	75	3	13	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0002	3267	67	3	31	22	4	7	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0003	3294	51	8	10	31	0	2	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0004	3267	17	16	1	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0005	3294	15	0	0	15	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0006	3294	15	4	4	1	2	4	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0007	3294	14	0	0	0	0	14	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0008	3267	11	0	0	11	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0009	3294	10	10	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	1/0	c0010	3294	7	6	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0011	3294	7	7	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0012	3294	4	0	1	0	2	1	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0013	3294	4	0	0	4	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0014	3267	3	3	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0015	3267	3	0	3	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0016	3267	3	3	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0017	3294	3	3	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0018	3294	3	3	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0019	3267	2	2	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0020	3267	2	2	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0021	3294	2	0	0	2	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0022	3240	2	0	0	2	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0023	3294	1	0	1	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0024	3294	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0025	3294	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0026	3267	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0027	3267	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0028	3267	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0029	3267	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0030	3267	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0031	3294	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0032	3267	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0033	3294	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0034	3294	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0035	3294	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0036	3294	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0037	3294	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0038	3294	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0039	3294	1	0	0	0	0	1	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0040	3294	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0041	3294	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0042	3294	1	0	0	0	0	1	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0043	3294	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0044	3294	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0045	3294	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964