JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOTCH2NLR_chr1_120718945_120799851	0/0	c0008	825	1	0	0	0	0	1	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	c0009	825	1	0	0	1	0	0	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	c0010	825	1	0	0	0	0	1	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	c0011	825	1	0	0	0	0	1	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	c0012	825	1	0	0	1	0	0	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2NLR_chr1_120718945_120799851	0/0	c0013	825	1	0	0	1	0	0	copy fasta	NOTCH2NLR	chr1	120718945	120799851
NOTCH2_chr1_119906553_120074662	1/1	c0001	7416	55	12	11	15	3	12	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0002	7416	42	23	6	6	2	5	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0003	7416	15	1	3	5	0	6	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0004	7416	14	14	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0005	7416	9	9	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0006	7416	4	0	2	0	0	2	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0007	7416	4	4	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0008	7416	3	3	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0009	7416	2	0	0	0	0	2	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0010	7416	2	2	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0011	7416	2	2	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0012	7416	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0013	7416	1	0	0	1	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0014	7416	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0015	7416	1	0	0	0	0	1	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0016	7416	1	0	0	0	0	1	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0017	7416	1	0	0	0	0	1	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0018	7416	1	0	0	1	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0019	7416	1	0	0	1	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0020	7416	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0021	7416	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0022	7416	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0023	7416	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0024	7416	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0025	7416	1	1	0	0	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0026	7416	1	0	0	1	0	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH2_chr1_119906553_120074662	0/0	c0027	7416	1	0	0	0	1	0	copy fasta	NOTCH2	chr1	119906553	120074662
NOTCH3_chr19_15154038_15205995	0/1	c0001	6966	103	8	29	42	8	15	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	1/0	c0002	6966	46	0	15	23	2	5	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0003	6966	34	6	5	19	0	4	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0004	6966	31	29	1	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0005	6966	14	0	2	11	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0006	6966	9	6	2	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0007	6966	8	0	0	8	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0008	6966	7	6	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0009	6966	6	2	0	2	1	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0010	6966	4	0	2	0	0	2	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0011	6966	4	0	0	4	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0012	6966	4	0	2	0	2	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0013	6966	4	0	0	4	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0014	6966	3	3	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0015	6966	3	2	1	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0016	6966	3	0	3	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0017	6966	3	0	0	3	0	0	copy fasta	NOTCH3	chr19	15154038	15205995