JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOTCH3_chr19_15154038_15205995	0/0	c0018	6966	3	3	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0019	6966	3	3	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0020	6966	3	3	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0021	6966	2	1	1	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0022	6966	2	0	0	2	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0023	6966	1	0	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0024	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0025	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0026	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0027	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0028	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0029	6966	1	0	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0030	6966	1	0	0	0	1	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0031	6966	1	0	1	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0032	6966	1	0	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0033	6966	1	0	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0034	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0035	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0036	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0037	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0038	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0039	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0040	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0041	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0042	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0043	6966	1	0	1	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0044	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0045	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0046	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0047	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0048	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0049	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0050	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0051	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0052	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0053	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0054	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0055	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0056	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0057	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0058	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0059	6966	1	0	1	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0060	6966	1	0	0	0	0	1	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0061	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0062	6966	1	0	0	1	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH3_chr19_15154038_15205995	0/0	c0063	6966	1	1	0	0	0	0	copy fasta	NOTCH3	chr19	15154038	15205995
NOTCH4_chr6_32189843_32229067	0/0	c0001	6009	57	9	9	34	1	4	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0002	6012	39	2	18	12	2	5	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0003	6000	30	1	2	22	1	4	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0004	6012	28	1	1	24	0	2	copy fasta	NOTCH4	chr6	32189843	32229067