JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOTCH4_chr6_32189843_32229067	0/0	c0005	6009	20	6	3	11	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0006	6015	19	7	1	11	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0007	6012	16	3	0	11	0	2	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0008	6012	14	0	0	14	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0009	6009	13	4	4	2	0	3	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0010	6009	12	0	0	10	1	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0011	6000	9	1	0	8	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0012	6009	9	9	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/1	c0013	6015	9	0	5	1	2	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0014	6009	8	1	2	3	0	2	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0015	6009	8	3	0	5	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0016	6009	7	3	4	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0017	6018	7	2	5	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0018	6009	6	0	0	6	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0019	6009	6	0	0	1	0	5	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0020	6018	6	2	0	0	0	4	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0021	6009	5	5	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0022	6012	5	1	4	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0023	6018	5	0	3	0	2	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0024	6009	4	0	2	0	2	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0025	6009	4	0	2	0	0	2	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0026	6009	4	4	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0027	6012	4	0	3	0	0	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0028	6012	4	0	1	0	0	3	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0029	6021	4	0	0	2	1	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0030	6000	3	3	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0031	6000	3	2	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0032	6000	3	0	0	3	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0033	6009	3	3	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0034	6009	3	3	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0035	6012	3	1	1	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0036	5997	2	0	0	2	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0037	6009	2	0	0	2	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0038	6009	2	2	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0039	6009	2	0	0	0	0	2	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0040	6009	2	0	0	2	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0041	6009	2	2	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0042	6009	2	2	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0043	6012	2	1	0	0	1	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0044	6015	2	0	0	2	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0045	6015	2	2	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0046	6000	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0047	6000	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0048	6000	1	0	0	0	0	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0049	6000	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0050	6000	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0051	6000	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0052	6009	1	0	0	0	1	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0053	6009	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0054	6009	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067