JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOTCH4_chr6_32189843_32229067	0/0	c0055	6009	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0056	6009	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0057	6009	1	0	0	0	0	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0058	6009	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0059	6009	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0060	6009	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0061	6009	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0062	6009	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0063	6009	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0064	6009	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0065	6009	1	0	0	0	1	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0066	6009	1	0	0	0	1	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0067	6009	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0068	6012	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0069	6012	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0070	6012	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0071	6012	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0072	6012	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0073	6012	1	0	0	0	0	1	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0074	6012	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0075	6015	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0076	6015	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0077	6015	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0078	6015	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0079	6015	1	0	0	1	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0080	6018	1	0	1	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0081	6018	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTCH4_chr6_32189843_32229067	0/0	c0082	6018	1	1	0	0	0	0	copy fasta	NOTCH4	chr6	32189843	32229067
NOTO_chr2_73197574_73217513	1/1	c0001	756	239	59	55	80	11	32	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	c0002	756	98	10	15	63	3	7	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	c0003	756	30	20	1	4	2	3	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	c0004	756	4	3	1	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	c0005	756	3	2	1	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	c0006	756	1	0	0	1	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	c0007	756	1	0	1	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	c0008	756	1	1	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	c0009	756	1	0	0	1	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	c0010	756	1	0	0	1	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTO_chr2_73197574_73217513	0/0	c0011	756	1	1	0	0	0	0	copy fasta	NOTO	chr2	73197574	73217513
NOTUM_chr17_81947507_81966187	1/1	c0001	1491	317	60	64	143	16	32	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0002	1491	41	12	5	14	2	8	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0003	1491	9	8	1	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0004	1491	4	4	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0005	1491	2	0	0	2	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0006	1491	2	1	1	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0007	1491	1	0	0	0	0	1	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0008	1469	1	0	1	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0009	1491	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0010	1491	1	0	0	1	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0011	1491	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187