JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOTUM_chr17_81947507_81966187	0/0	c0012	1491	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0013	1491	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0014	1491	1	0	0	0	0	1	copy fasta	NOTUM	chr17	81947507	81966187
NOTUM_chr17_81947507_81966187	0/0	c0015	1525	1	1	0	0	0	0	copy fasta	NOTUM	chr17	81947507	81966187
NOVA1_chr14_26438090_26603033	1/1	c0001	1524	242	85	30	103	6	16	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	c0002	1524	1	1	0	0	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA1_chr14_26438090_26603033	0/0	c0003	1524	1	0	0	1	0	0	copy fasta	NOVA1	chr14	26438090	26603033
NOVA2_chr19_45928734_45978865	0/1	c0001	1479	272	55	35	148	6	27	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	1/0	c0002	1479	98	15	32	36	6	8	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	c0003	1479	25	20	3	0	0	2	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	c0004	1479	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	c0005	1479	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	c0006	1479	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	c0007	1479	1	1	0	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	c0008	1479	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	c0009	1479	1	0	0	0	0	1	copy fasta	NOVA2	chr19	45928734	45978865
NOVA2_chr19_45928734_45978865	0/0	c0010	1479	1	0	1	0	0	0	copy fasta	NOVA2	chr19	45928734	45978865
NOX1_chrX_100838324_100879359	1/1	c0001	1695	287	61	51	130	11	32	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	c0002	1695	7	6	1	0	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	c0003	1695	2	2	0	0	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	c0004	1695	1	0	0	1	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	c0005	1695	1	0	0	1	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	c0006	1695	1	0	0	1	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	c0007	1695	1	1	0	0	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	c0008	1695	1	1	0	0	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX1_chrX_100838324_100879359	0/0	c0009	1695	1	1	0	0	0	0	copy fasta	NOX1	chrX	100838324	100879359
NOX3_chr6_155390368_155460839	0/1	c0001	1707	152	44	25	59	5	18	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0002	1707	76	4	11	52	0	9	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	1/0	c0003	1707	54	23	20	5	2	3	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0004	1707	24	4	7	8	2	3	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0005	1707	16	2	7	5	1	1	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0006	1707	12	9	1	0	0	2	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0007	1707	8	0	1	6	0	1	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0008	1707	3	0	0	3	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0009	1707	2	2	0	0	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0010	1707	2	2	0	0	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0011	1707	2	0	0	1	0	1	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0012	1707	2	0	0	2	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0013	1707	1	0	0	1	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0014	1707	1	0	0	0	0	1	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0015	1707	1	0	0	1	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0016	1707	1	0	0	1	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0017	1707	1	0	0	1	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0018	1707	1	1	0	0	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0019	1707	1	1	0	0	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0020	1707	1	0	0	0	0	1	copy fasta	NOX3	chr6	155390368	155460839
NOX3_chr6_155390368_155460839	0/0	c0021	1707	1	0	0	1	0	0	copy fasta	NOX3	chr6	155390368	155460839
NOX4_chr11_89319353_89496375	0/1	c0001	1737	192	54	39	72	11	15	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	c0002	1737	51	21	3	27	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	c0003	1737	32	0	10	12	5	5	copy fasta	NOX4	chr11	89319353	89496375