JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOX4_chr11_89319353_89496375	0/0	c0004	1737	2	2	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	c0005	1737	2	0	0	1	0	1	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	c0006	1737	2	0	0	2	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	c0007	1737	1	0	0	1	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	c0008	1737	1	1	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	c0009	1737	1	0	0	1	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	c0010	1737	1	0	0	0	0	1	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	1/0	c0011	1737	1	0	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	c0012	1737	1	1	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX4_chr11_89319353_89496375	0/0	c0013	1737	1	1	0	0	0	0	copy fasta	NOX4	chr11	89319353	89496375
NOX5_chr15_69009695_69067762	0/0	c0001	2298	158	29	28	70	6	25	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/1	c0002	2298	70	11	17	21	8	12	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	1/0	c0003	2298	66	22	1	39	0	3	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0004	2298	56	9	4	42	0	1	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0005	2298	13	0	5	7	0	1	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0006	2298	5	5	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0007	2298	5	0	0	5	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0008	2298	4	4	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0009	2298	2	0	0	2	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0010	2298	2	2	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0011	2298	2	2	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0012	2298	2	0	0	2	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0013	2298	2	0	0	2	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0014	2298	2	0	2	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0015	2298	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0016	2298	1	0	1	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0017	2298	1	0	1	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0018	2298	1	0	1	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0019	2298	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0020	2298	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOX5_chr15_69009695_69067762	0/0	c0021	2298	1	1	0	0	0	0	copy fasta	NOX5	chr15	69009695	69067762
NOXA1_chr9_137418393_137439406	1/0	c0001	1431	286	70	59	119	10	27	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/1	c0002	1431	70	6	7	38	5	13	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0003	1431	15	6	4	1	1	3	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0004	1431	6	0	2	3	0	1	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0005	1431	6	6	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0006	1431	4	0	0	4	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0007	1431	3	3	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0008	1431	2	2	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0009	1431	2	0	2	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0010	1431	2	0	0	2	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0011	1431	2	0	2	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0012	1431	1	0	0	1	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0013	1431	1	1	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0014	1431	1	0	0	1	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0015	1431	1	0	0	1	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0016	1431	1	1	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXA1_chr9_137418393_137439406	0/0	c0017	1431	1	1	0	0	0	0	copy fasta	NOXA1	chr9	137418393	137439406
NOXO1_chr16_1973917_1986469	1/0	c0001	1116	293	68	44	143	10	27	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0002	1116	51	0	7	36	3	5	copy fasta	NOXO1	chr16	1973917	1986469