JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NOXO1_chr16_1973917_1986469	0/0	c0003	1116	46	1	19	9	2	15	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/1	c0004	1116	22	10	8	0	2	1	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0005	1116	13	12	1	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0006	1116	2	2	0	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0007	1116	2	0	0	2	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0008	1116	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0009	1116	1	0	1	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0010	1116	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0011	1116	1	1	0	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0012	1116	1	0	0	0	0	1	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0013	1116	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0014	1116	1	0	0	0	1	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0015	1116	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0016	1116	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0017	1116	1	1	0	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0018	1116	1	0	0	0	0	1	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0019	1116	1	0	0	1	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXO1_chr16_1973917_1986469	0/0	c0020	1116	1	1	0	0	0	0	copy fasta	NOXO1	chr16	1973917	1986469
NOXRED1_chr14_77389021_77428523	1/1	c0001	1080	250	75	48	86	9	30	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	c0002	1080	43	11	17	2	3	10	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	c0003	1080	2	0	2	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	c0004	1080	1	0	1	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	c0005	1080	1	1	0	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NOXRED1_chr14_77389021_77428523	0/0	c0006	1080	1	1	0	0	0	0	copy fasta	NOXRED1	chr14	77389021	77428523
NPAP1_chr15_24670775_24688393	0/1	c0001	3471	122	3	16	85	6	11	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0002	3471	75	24	3	45	0	3	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	1/0	c0003	3471	63	6	25	11	5	15	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0004	3471	54	7	10	28	5	4	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0005	3471	49	8	14	22	1	4	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0006	3471	14	14	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0007	3471	8	0	0	8	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0008	3471	5	0	5	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0009	3471	5	5	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0010	3471	5	5	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0011	3471	4	4	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0012	3471	3	0	0	0	1	2	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0013	3471	3	0	0	3	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0014	3471	3	3	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0015	3471	2	0	0	2	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0016	3471	2	2	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0017	3471	2	2	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0018	3471	2	1	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0019	3471	2	2	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0020	3471	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0021	3471	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0022	3471	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0023	3471	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0024	3471	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0025	3471	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0026	3471	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393