JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPAP1_chr15_24670775_24688393	0/0	c0027	3471	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0028	3471	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0029	3471	1	0	0	0	0	1	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0030	3471	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0031	3471	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0032	3471	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0033	3471	1	0	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0034	3471	1	0	0	1	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0035	3471	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0036	3471	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0037	3471	1	0	1	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0038	3471	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0039	3471	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAP1_chr15_24670775_24688393	0/0	c0040	3471	1	1	0	0	0	0	copy fasta	NPAP1	chr15	24670775	24688393
NPAS1_chr19_47014837_47050775	0/0	c0001	1773	204	16	35	126	10	17	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	1/0	c0002	1773	136	47	22	40	7	19	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/1	c0003	1773	45	15	15	3	1	10	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0004	1773	13	13	0	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0005	1773	4	2	2	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0006	1773	2	0	0	0	0	2	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0007	1773	2	1	0	1	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0008	1773	2	1	1	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0009	1773	1	0	1	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0010	1773	1	0	0	0	0	1	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0011	1773	1	0	0	0	0	1	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0012	1773	1	0	0	1	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0013	1773	1	1	0	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0014	1773	1	0	0	1	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0015	1773	1	1	0	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0016	1773	1	0	0	1	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0017	1773	1	0	0	1	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS1_chr19_47014837_47050775	0/0	c0018	1773	1	1	0	0	0	0	copy fasta	NPAS1	chr19	47014837	47050775
NPAS2_chr2_100815139_101001829	0/0	c0001	2475	102	32	15	46	2	7	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0002	2475	50	22	2	22	2	2	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	1/1	c0003	2475	37	6	7	17	1	4	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0004	2475	37	2	7	21	2	5	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0005	2475	18	2	3	7	2	4	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0006	2475	8	0	1	1	1	5	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0007	2475	8	0	2	5	1	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0008	2475	3	3	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0009	2475	3	3	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0010	2475	2	0	0	0	0	2	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0011	2475	2	0	0	2	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0012	2475	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0013	2475	1	0	0	0	1	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0014	2475	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0015	2475	1	0	0	0	0	1	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0016	2475	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0017	2475	1	0	0	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0018	2475	1	0	0	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829