JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPAS2_chr2_100815139_101001829	0/0	c0019	2475	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0020	2475	1	0	0	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0021	2475	1	0	0	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0022	2475	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0023	2475	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0024	2475	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0025	2475	1	0	0	1	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0026	2475	1	0	1	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0027	2475	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0028	2475	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS2_chr2_100815139_101001829	0/0	c0029	2475	1	1	0	0	0	0	copy fasta	NPAS2	chr2	100815139	101001829
NPAS3_chr14_32933879_33809173	1/1	c0001	2802	69	45	11	2	3	6	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	c0002	2802	9	8	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	c0003	2802	3	2	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	c0004	2802	3	3	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	c0005	2802	3	1	1	0	1	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	c0006	2802	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	c0007	2802	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	c0008	2802	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	c0009	2802	1	0	1	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS3_chr14_32933879_33809173	0/0	c0010	2802	1	1	0	0	0	0	copy fasta	NPAS3	chr14	32933879	33809173
NPAS4_chr11_66416035_66431707	1/1	c0001	2409	329	81	45	159	12	30	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	c0002	2409	75	3	31	31	4	6	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	c0003	2409	7	0	0	7	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	c0004	2409	4	4	0	0	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	c0005	2409	2	0	0	0	2	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	c0006	2409	2	0	0	2	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	c0007	2445	1	0	1	0	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	c0008	2409	1	0	0	1	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	c0009	2409	1	0	1	0	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	c0010	2409	1	0	0	1	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAS4_chr11_66416035_66431707	0/0	c0011	2409	1	0	0	1	0	0	copy fasta	NPAS4	chr11	66416035	66431707
NPAT_chr11_108152215_108227638	0/0	c0001	4284	182	44	30	77	8	23	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	1/0	c0002	4284	86	23	14	39	0	9	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0003	4284	33	0	5	27	0	1	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0004	4284	15	13	2	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0005	4284	7	1	0	1	2	3	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0006	4284	4	4	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/1	c0007	4284	3	0	2	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0008	4284	3	0	2	0	1	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0009	4284	2	0	2	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0010	4284	1	0	0	1	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0011	4284	1	0	0	1	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0012	4284	1	1	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0013	4284	1	0	1	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0014	4284	1	0	0	1	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0015	4284	1	0	0	0	0	1	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0016	4284	1	0	0	1	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0017	4284	1	1	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0018	4284	1	0	0	0	1	0	copy fasta	NPAT	chr11	108152215	108227638