JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
APOBR_chr16_28489643_28503964	0/0	c0046	3267	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0047	3267	1	0	0	0	0	1	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0048	3267	1	0	0	0	0	1	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0049	3267	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/1	c0050	3267	1	0	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0051	3267	1	0	0	0	1	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0052	3267	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0053	3267	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0054	3267	1	0	1	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0055	3294	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0056	3294	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0057	3294	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0058	3294	1	0	1	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0059	3241	1	0	0	1	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0060	3294	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0061	3267	1	1	0	0	0	0	copy fasta	APOBR	chr16	28489643	28503964
APOBR_chr16_28489643_28503964	0/0	c0062	3294	1	0	0	0	0	1	copy fasta	APOBR	chr16	28489643	28503964
APOB_chr2_20996429_21049073	0/0	c0001	13692	57	3	3	38	1	12	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0002	13683	25	2	6	10	2	5	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0003	13692	22	0	0	21	0	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0004	13692	19	7	7	5	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0005	13692	15	13	2	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0006	13692	13	0	2	10	0	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0007	13692	12	2	5	1	0	4	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0008	13692	10	1	4	0	2	3	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0009	13692	10	1	3	2	2	2	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0010	13683	8	0	0	8	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0011	13692	7	7	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0012	13683	6	0	6	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0013	13692	6	5	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0014	13692	5	0	0	5	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0015	13692	5	0	0	5	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0016	13683	4	4	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0017	13683	4	1	0	3	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0018	13692	4	4	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0019	13692	4	3	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0020	13692	4	1	3	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0021	13683	3	1	1	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0022	13692	3	2	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0023	13692	3	2	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0024	13683	2	0	0	2	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0025	13683	2	1	1	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0026	13683	2	0	0	1	0	1	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0027	13683	2	0	0	2	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0028	13683	2	0	1	1	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0029	13683	2	0	0	0	0	2	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0030	13683	2	0	2	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0031	13692	2	2	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0032	13692	2	0	2	0	0	0	copy fasta	APOB	chr2	20996429	21049073
APOB_chr2_20996429_21049073	0/0	c0033	13692	2	2	0	0	0	0	copy fasta	APOB	chr2	20996429	21049073