JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPAT_chr11_108152215_108227638	0/0	c0019	4284	1	1	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0020	4284	1	1	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0021	4284	1	0	0	0	1	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0022	4284	1	1	0	0	0	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0023	4284	1	0	0	0	1	0	copy fasta	NPAT	chr11	108152215	108227638
NPAT_chr11_108152215_108227638	0/0	c0024	4284	1	0	0	0	0	1	copy fasta	NPAT	chr11	108152215	108227638
NPBWR1_chr8_52934182_52948734	1/1	c0001	987	364	86	68	169	11	28	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	c0002	987	42	0	6	24	1	11	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	c0003	987	6	0	3	2	0	1	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	c0004	987	2	2	0	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	c0005	987	1	0	1	0	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR1_chr8_52934182_52948734	0/0	c0006	987	1	0	0	1	0	0	copy fasta	NPBWR1	chr8	52934182	52948734
NPBWR2_chr20_64098802_64112565	0/0	c0001	1002	169	38	31	74	9	17	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/1	c0002	1002	142	50	27	34	3	27	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	c0003	1002	27	0	7	14	2	4	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	c0004	1002	6	0	0	6	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	c0005	1002	4	0	3	0	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	c0006	1002	2	0	0	1	1	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	c0007	1002	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	c0008	1002	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	c0009	1002	1	0	0	1	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	c0010	1002	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPBWR2_chr20_64098802_64112565	0/0	c0011	1002	1	1	0	0	0	0	copy fasta	NPBWR2	chr20	64098802	64112565
NPB_chr17_81897238_81907905	1/1	c0001	378	285	72	52	107	8	44	copy fasta	NPB	chr17	81897238	81907905
NPB_chr17_81897238_81907905	0/0	c0002	378	5	4	1	0	0	0	copy fasta	NPB	chr17	81897238	81907905
NPB_chr17_81897238_81907905	0/0	c0003	378	3	3	0	0	0	0	copy fasta	NPB	chr17	81897238	81907905
NPB_chr17_81897238_81907905	0/0	c0004	378	1	1	0	0	0	0	copy fasta	NPB	chr17	81897238	81907905
NPB_chr17_81897238_81907905	0/0	c0005	378	1	0	0	1	0	0	copy fasta	NPB	chr17	81897238	81907905
NPB_chr17_81897238_81907905	0/0	c0006	378	1	0	1	0	0	0	copy fasta	NPB	chr17	81897238	81907905
NPC1L1_chr7_44507535_44546330	1/0	c0001	3999	171	32	40	66	7	25	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0002	3999	73	12	7	47	5	2	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/1	c0003	3999	10	0	2	3	2	2	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0004	3999	4	0	3	0	0	1	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0005	3999	4	4	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0006	3999	3	2	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0007	3999	3	3	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0008	3999	3	0	1	0	2	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0009	3999	3	2	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0010	3999	2	2	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0011	3999	2	0	0	2	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0012	3999	2	2	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0013	3999	2	0	0	0	2	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0014	3999	2	2	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0015	3999	2	2	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0016	3999	2	1	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0017	3999	2	2	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0018	3999	2	0	0	0	0	2	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0019	3999	2	2	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0020	3999	2	0	0	2	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0021	3999	1	0	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330