JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPC1L1_chr7_44507535_44546330	0/0	c0022	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0023	3999	1	0	0	0	0	1	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0024	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0025	3999	1	0	0	1	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0026	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0027	3999	1	0	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0028	3999	1	0	0	0	0	1	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0029	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0030	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0031	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0032	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0033	3999	1	0	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0034	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0035	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0036	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0037	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0038	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0039	3999	1	0	1	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0040	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0041	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0042	3999	1	0	0	1	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0043	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1L1_chr7_44507535_44546330	0/0	c0044	3999	1	1	0	0	0	0	copy fasta	NPC1L1	chr7	44507535	44546330
NPC1_chr18_23526442_23591506	0/0	c0001	3837	76	28	2	39	0	7	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0002	3837	69	19	8	42	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0003	3837	63	6	12	32	3	10	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0004	3837	60	1	13	38	4	4	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	1/0	c0005	3837	44	6	11	14	5	7	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/1	c0006	3837	18	3	4	2	0	8	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0007	3837	5	5	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0008	3837	4	4	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0009	3837	3	3	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0010	3837	3	3	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0011	3837	3	3	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0012	3837	2	2	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0013	3837	2	1	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0014	3837	2	2	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0015	3837	2	1	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0016	3837	2	0	2	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0017	3837	2	0	0	2	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0018	3785	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0019	3837	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0020	3837	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0021	3837	1	1	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0022	3837	1	1	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0023	3837	1	0	0	1	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0024	3837	1	0	0	1	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0025	3837	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0026	3837	1	1	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0027	3837	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506