JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPC1_chr18_23526442_23591506	0/0	c0028	3837	1	1	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0029	3837	1	1	0	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0030	3837	1	0	0	1	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0031	3837	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0032	3837	1	0	0	0	0	1	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0033	3837	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0034	3837	1	0	0	0	0	1	copy fasta	NPC1	chr18	23526442	23591506
NPC1_chr18_23526442_23591506	0/0	c0035	3837	1	0	1	0	0	0	copy fasta	NPC1	chr18	23526442	23591506
NPC2_chr14_74474940_74498305	1/1	c0001	456	408	90	69	189	16	42	copy fasta	NPC2	chr14	74474940	74498305
NPC2_chr14_74474940_74498305	0/0	c0002	456	1	0	0	1	0	0	copy fasta	NPC2	chr14	74474940	74498305
NPC2_chr14_74474940_74498305	0/0	c0003	456	1	0	1	0	0	0	copy fasta	NPC2	chr14	74474940	74498305
NPDC1_chr9_137034463_137051177	1/1	c0001	978	366	75	79	159	9	42	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0002	978	10	3	0	7	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0003	978	8	1	0	7	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0004	978	2	0	2	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0005	978	2	2	0	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0006	978	1	0	1	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0007	978	1	1	0	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0008	978	1	1	0	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0009	978	1	0	0	1	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0010	978	1	0	1	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0011	978	1	0	0	0	0	1	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0012	978	1	0	0	0	0	1	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0013	978	1	0	0	1	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0014	978	1	0	0	0	1	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0015	978	1	0	0	0	0	1	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0016	978	1	1	0	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0017	978	1	0	1	0	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0018	978	1	0	0	0	0	1	copy fasta	NPDC1	chr9	137034463	137051177
NPDC1_chr9_137034463_137051177	0/0	c0019	978	1	0	0	1	0	0	copy fasta	NPDC1	chr9	137034463	137051177
NPEPL1_chr20_58687800_58720844	0/0	c0001	1572	119	9	18	74	4	14	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	1/1	c0002	1572	118	8	37	49	4	18	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0003	1572	44	22	9	8	0	5	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0004	1572	28	28	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0005	1572	19	5	4	1	3	6	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0006	1572	17	1	1	12	0	3	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0007	1572	17	0	0	16	0	1	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0008	1572	13	3	4	6	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0009	1572	4	3	1	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0010	1572	4	4	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0011	1572	3	0	2	0	1	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0012	1572	2	1	0	0	0	1	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0013	1572	2	2	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0014	1572	2	2	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0015	1572	2	2	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0016	1572	1	1	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0017	1572	1	1	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0018	1572	1	1	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPL1_chr20_58687800_58720844	0/0	c0019	1572	1	1	0	0	0	0	copy fasta	NPEPL1	chr20	58687800	58720844
NPEPPS_chr17_47526108_47628276	1/0	c0001	2760	306	64	50	142	12	37	copy fasta	NPEPPS	chr17	47526108	47628276