JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPEPPS_chr17_47526108_47628276	0/0	c0002	2760	13	0	0	13	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	c0003	2760	11	1	7	0	2	1	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	c0004	2760	3	2	1	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/1	c0005	2760	2	0	1	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	c0006	2760	2	2	0	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	c0007	2760	1	1	0	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	c0008	2760	1	0	1	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	c0009	2760	1	0	0	1	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	c0010	2760	1	1	0	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPEPPS_chr17_47526108_47628276	0/0	c0011	2760	1	1	0	0	0	0	copy fasta	NPEPPS	chr17	47526108	47628276
NPFFR1_chr10_70242329_70289004	1/1	c0001	1293	210	49	45	86	3	25	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0002	1293	46	11	16	1	5	13	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0003	1293	26	17	4	4	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0004	1293	21	4	2	12	0	3	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0005	1293	19	1	2	11	4	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0006	1293	11	0	0	9	1	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0007	1293	7	6	1	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0008	1293	6	5	0	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0009	1293	4	0	0	4	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0010	1293	3	1	2	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0011	1293	3	3	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0012	1293	3	3	0	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0013	1293	2	0	2	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0014	1293	1	0	0	0	1	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0015	1293	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0016	1293	1	0	1	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0017	1293	1	0	0	0	0	1	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0018	1293	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0019	1293	1	0	0	1	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR1_chr10_70242329_70289004	0/0	c0020	1293	1	0	1	0	0	0	copy fasta	NPFFR1	chr10	70242329	70289004
NPFFR2_chr4_72027000_72153305	1/1	c0001	1263	334	75	55	156	10	36	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	c0002	1263	4	4	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	c0003	1263	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	c0004	1263	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	c0005	1263	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	c0006	1263	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	c0007	1263	1	1	0	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFFR2_chr4_72027000_72153305	0/0	c0008	1263	1	0	1	0	0	0	copy fasta	NPFFR2	chr4	72027000	72153305
NPFF_chr12_53501688_53512484	1/1	c0001	342	325	80	70	109	16	48	copy fasta	NPFF	chr12	53501688	53512484
NPFF_chr12_53501688_53512484	0/0	c0002	342	11	6	0	5	0	0	copy fasta	NPFF	chr12	53501688	53512484
NPFF_chr12_53501688_53512484	0/0	c0003	342	2	2	0	0	0	0	copy fasta	NPFF	chr12	53501688	53512484
NPHP1_chr2_110118348_110210013	1/1	c0001	2034	159	37	30	70	5	15	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	c0002	2034	151	38	21	65	5	22	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	c0003	2034	6	6	0	0	0	0	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	c0004	2034	3	0	0	0	2	1	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	c0005	2034	1	1	0	0	0	0	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	c0006	2034	1	0	1	0	0	0	copy fasta	NPHP1	chr2	110118348	110210013
NPHP1_chr2_110118348_110210013	0/0	c0007	2034	1	0	0	1	0	0	copy fasta	NPHP1	chr2	110118348	110210013
NPHP3_chr3_132675609_132727409	1/0	c0001	3993	180	44	44	67	5	19	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/1	c0002	3993	90	10	2	67	4	6	copy fasta	NPHP3	chr3	132675609	132727409