JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPHP3_chr3_132675609_132727409	0/0	c0003	3993	22	11	2	8	0	1	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0004	3993	7	7	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0005	3993	5	4	1	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0006	3993	5	4	1	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0007	3993	4	4	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0008	3993	3	3	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0009	3993	3	3	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0010	3993	3	0	0	3	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0011	3993	2	0	1	0	1	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0012	3993	2	0	0	0	0	2	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0013	3993	2	0	0	2	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0014	3993	2	0	0	2	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0015	3993	1	0	0	0	0	1	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0016	3993	1	0	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0017	3993	1	1	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0018	3993	1	0	1	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0019	3993	1	1	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0020	3993	1	0	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0021	3993	1	1	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0022	3993	1	0	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0023	3993	1	0	0	0	0	1	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0024	3993	1	0	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0025	3993	1	1	0	0	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP3_chr3_132675609_132727409	0/0	c0026	3993	1	0	0	1	0	0	copy fasta	NPHP3	chr3	132675609	132727409
NPHP4_chr1_5857811_5997425	0/0	c0001	4281	63	13	15	21	2	12	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0002	4281	40	4	12	11	4	9	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0003	4281	31	16	4	3	1	7	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0004	4281	17	1	7	8	0	1	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0005	4281	11	11	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0006	4281	6	6	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0007	4281	4	4	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0008	4281	3	0	2	0	1	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0009	4281	2	0	1	0	0	1	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0010	4281	2	0	0	2	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0011	4281	2	0	0	2	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0012	4281	2	0	0	0	0	2	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0013	4281	1	0	0	0	0	1	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0014	4281	1	0	1	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0015	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0016	4281	1	0	0	0	0	1	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0017	4281	1	0	0	1	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0018	4281	1	0	0	1	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0019	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0020	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0021	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0022	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0023	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0024	4281	1	0	1	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0025	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0026	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425