JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
NPHP4_chr1_5857811_5997425	0/0	c0027	4281	1	0	1	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0028	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0029	4281	1	0	0	1	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0030	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0031	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0032	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0033	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0034	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0035	4281	1	0	0	1	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0036	4281	1	0	0	1	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHP4_chr1_5857811_5997425	0/0	c0037	4281	1	1	0	0	0	0	copy fasta	NPHP4	chr1	5857811	5997425
NPHS1_chr19_35820372_35857504	1/1	c0001	3726	76	24	22	5	6	17	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0002	3726	72	0	17	45	4	6	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0003	3726	36	5	10	15	3	3	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0004	3726	36	3	7	17	1	8	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0005	3726	22	18	3	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0006	3726	11	6	2	1	0	2	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0007	3726	11	1	0	10	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0008	3726	9	0	0	9	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0009	3726	8	8	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0010	3726	8	0	0	8	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0011	3726	6	0	6	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0012	3726	6	5	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0013	3726	6	1	0	5	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0014	3726	5	0	0	5	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0015	3726	5	2	1	0	2	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0016	3726	3	0	0	3	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0017	3726	3	0	0	2	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0018	3726	3	2	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0019	3726	3	0	0	3	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0020	3726	3	0	0	3	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0021	3726	3	0	0	3	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0022	3726	2	1	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0023	3726	2	2	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0024	3726	2	0	0	0	0	2	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0025	3726	2	0	1	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0026	3726	2	1	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0027	3726	2	2	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0028	3726	2	0	0	2	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0029	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0030	3726	1	0	1	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0031	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0032	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0033	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0034	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0035	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0036	3726	1	0	0	1	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0037	3726	1	0	0	0	0	1	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0038	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504
NPHS1_chr19_35820372_35857504	0/0	c0039	3726	1	1	0	0	0	0	copy fasta	NPHS1	chr19	35820372	35857504